Hg_chrom5_TN10mRNA_10691
Organism: Heterodera glycines Gene Locus: chr5:9189181-9193247 Feature type: polypeptideProtein Sequence
Length: 658
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.909 | 1.096 | 0.636 | 0.419 | 0.456 | 1.325 | 0.796 | 1.52 | 0.675 | 0.924 | 0.599 | 1.699 | 1.013 | 1.724 | 0.93 | 1.498 | 1.196 | 0.599 | 0.468 | 0.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10067
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LGEV,PPKKRPK,PKKRPKSDKK
|
— | — |
5-25
|
0.996
|
— | — |
0.000
|
— | — |
0.871
|
0.171
|
0.006
|
0.384
|
0.033
|
0.020
|
0.022
|
0.085
|
0.059
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010008
|
1.000
|
1.000
|
Hsc_gene_26294.t1
|
Hsc_gene_26294.t1
|
— |
Q63046.1 Runt-related transcription factor 1 [Rattus norvegicus]
|
KAH7713497.1 runt [Aphelenchus avenae]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0005524|GO:0005634|GO:0006355
|
GO:0008150_0.956|GO:0009987_0.894|GO:0003674_0.890|GO:0005575_0.857|GO:0065007_0.856|GO:0110165_0.856|GO:0005488_0.836|GO:0050789_0.834|GO:0032501_0.811|GO:0032502_0.808|GO:0016020_0.766|GO:0050794_0.762|GO:0048518_0.751|GO:0008152_0.744|GO:0005622_0.740|GO:0044238_0.733|GO:0044237_0.726|GO:0009058_0.716|GO:0043170_0.708|GO:0019222_0.707|GO:0031323_0.707|GO:0080090_0.706|GO:0097159_0.702|GO:0044249_0.699|GO:0060255_0.698|GO:0043226_0.696|GO:0006139_0.695|GO:0009059_0.695|GO:0010467_0.694|GO:0034654_0.694|GO:0048522_0.691|GO:0048869_0.688|GO:0009889_0.687|GO:0031326_0.687|GO:0003676_0.686|GO:0010556_0.686|GO:0043229_0.685|GO:0048856_0.685|GO:0010468_0.684|GO:0016070_0.684|GO:0030154_0.684|GO:0090304_0.684|GO:0032774_0.681|GO:0141187_0.681|GO:0019219_0.680|GO:0051252_0.675|GO:0007275_0.674|GO:0006351_0.670|GO:0006355_0.666|GO:2001141_0.666|GO:0006357_0.656|GO:0006366_0.656|GO:0043227_0.653|GO:0003677_0.641|GO:0043565_0.641|GO:0043231_0.637|GO:0050896_0.635|GO:0003690_0.634|GO:1990837_0.634|GO:0048519_0.614|GO:0048523_0.605|GO:0009893_0.598|GO:0010604_0.598|GO:0009891_0.594|GO:0031325_0.594|GO:0048731_0.593|GO:0031328_0.592|GO:0005634_0.591|GO:0010557_0.585|GO:0045935_0.584|GO:0051254_0.584|GO:0045893_0.578|GO:0050793_0.578|GO:1902680_0.578|GO:0045944_0.567|GO:0051239_0.564|GO:0009892_0.513|GO:0010605_0.508|GO:0031324_0.505|GO:0009890_0.502|GO:0010558_0.502|GO:0031327_0.502
|
IPR000040+32-402_75-96_97-116_117-138_139-160+|IPR008967+68-185+|IPR012346+55-192+|IPR013524+57-186_68-186+
|
— |
PF00853+68-186+Runt_domain
|
— |
PTHR11950+32-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;169-289;523-658
|
2.000
|
52-168;290-522
|
4l0z_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
68275.910
|
10.171
|
25.000
|
17.781
|
7.599
|
45.441
|
54.559
|
11.550
|
6.231
|
63.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
96.534
|
84.092
|
260.599
|
190.479
|
127.859
|
112.070
|
52.824
|
75.806
|
8.967
|
76.712
|
47.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.404
|
1.043
|
-0.343
|
-0.608
|
— |
-1.075
|
-0.669
|
-0.380
|
— |
4.635
|
— | — | — |
No JSON data available for plots.