Hg_chrom5_TN10mRNA_10694
Organism: Heterodera glycines Gene Locus: chr5:9199494-9200281 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.475 | 1.388 | 0.543 | 0.257 | 0.498 | 1.531 | 0.8 | 0.746 | 1.824 | 0.605 | 0.678 | 2.195 | 1.244 | 0.861 | 0.457 | 1.173 | 1.346 | 1.357 | 0.0 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10070
|
— | — |
2.778
|
3.000
|
3.000
|
1.000
|
2.000
|
3.000
|
3.000
|
3.000
|
3.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — |
4-29
|
0.981
|
— | — |
0.000
|
— | — |
0.253
|
0.359
|
0.057
|
0.486
|
0.081
|
0.273
|
0.078
|
0.736
|
0.226
|
0.415
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000879
|
1.000
|
5.000
|
Hsc_gene_11338.t1;Hsc_gene_11343.t1;Hsc_gene_11346.t1;Hsc_gene_11349.t1;Hsc_gene_11360.t1
|
Hsc_gene_11338.t1;Hsc_gene_11343.t1;Hsc_gene_11346.t1;Hsc_gene_11349.t1;Hsc_gene_11360.t1;Hsc_gene_17426.t1;Hsc_gene_17428.t1
|
— |
P80601.3 2-iminobutanoate/2-iminopropanoate deaminase [Capra hircus]
|
XP_063306372.1 2-iminobutanoate/2-iminopropanoate deaminase isoform X1 [Pelobates fuscus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.718|GO:0005575_0.664|GO:0003674_0.649|GO:0110165_0.648|GO:0009987_0.639|GO:0005622_0.566|GO:0005737_0.566|GO:0016020_0.562|GO:0008152_0.527|GO:0044237_0.504
|
IPR006056+7-129+|IPR006175+7-130_12-130+|IPR035959+5-132_7-131+
|
— |
PF01042+12-130+Endoribonuclease_L-PSP
|
G3DSA:3.30.1330.40:FF:000001+5-130+L-PSP_family_endoribonuclease
|
PTHR11803+7-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
14227.290
|
8.020
|
2.000
|
14.179
|
8.955
|
42.537
|
57.463
|
8.209
|
5.970
|
58.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
7016.945
|
7.780
|
17.892
|
119.065
|
587.870
|
26437.840
|
131.742
|
35609.521
|
0.000
|
7107.243
|
4061.282
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
3.804
|
2.840
|
2.273
|
5.505
|
-7.637
|
— |
-7.931
|
-13.593
|
7.753
|
-3.265
|
— | — |
No JSON data available for plots.