SCN Proteipedia

Hg_chrom5_TN10mRNA_10695

Organism: Heterodera glycines Gene Locus: chr5:9201968-9203863 Feature type: polypeptide

Protein Sequence

Length: 408

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.769	0.627	1.07	0.338	0.98	0.88	0.846	1.716	1.089	0.961	0.854	2.163	1.225	0.848	1.801	0.84	1.165	1.188	1.32	0.721	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10071	—	—	1.778	2.000	2.000	1.000	1.000	2.000	2.000	2.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.266	0.262	0.019	0.576	0.148	0.283	0.113	0.011	0.405	0.160

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001710	3.000	1.000	Hsc_gene_11361.t1	Hsc_gene_11337.t1;Hsc_gene_11344.t1;Hsc_gene_11347.t1;Hsc_gene_11350.t1;Hsc_gene_11361.t1;Hsc_gene_17427.t1;Hsc_gene_17429.t1;Hsc_gene_20092.t1;Hsc_gene_20092.t2;Hsc_gene_26291.t1;Hsc_gene_26292.t1;Hsc_gene_4022.t1;Hsc_gene_4022.t2	—	P34265.4 Probable tyrosine-protein kinase kin-31 [Caenorhabditis elegans]	KAF7633898.1 Tyrosine-protein kinase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.903\|GO:0005575_0.863\|GO:0110165_0.856\|GO:0009987_0.839\|GO:0003674_0.763\|GO:0065007_0.719\|GO:0050789_0.709\|GO:0003824_0.699\|GO:0005622_0.665\|GO:0050794_0.651\|GO:0016740_0.638\|GO:0050896_0.635\|GO:0005488_0.613\|GO:0008152_0.604\|GO:0051716_0.597\|GO:0016020_0.582\|GO:0044237_0.571\|GO:0140096_0.571\|GO:0044238_0.554\|GO:0043170_0.551\|GO:0032501_0.538\|GO:0016772_0.536\|GO:0023052_0.529\|GO:0007154_0.527\|GO:0007165_0.511\|GO:0005515_0.510\|GO:0016301_0.509\|GO:0032502_0.508\|GO:0016773_0.502	IPR000719+120-380+\|IPR000980+10-95_12-88_12-108+\|IPR001245+121-369_199-212_234-252_279-289_298-320+\|IPR008266+240-252+\|IPR011009+110-381+\|IPR017441+126-153+\|IPR035849+9-93+\|IPR036860+1-109_5-121+\|IPR050198+9-372+	SM00252+10-95+	PF00017+12-88+SH2_domain\|PF07714+121-369+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR24418+9-372+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	379-408	1.000	1-378	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.786	46444.200	9.867	18.000	29.657	12.010	48.775	51.225	17.892	11.765	48.529

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	734.691	16.542	50.560	59.991	119.484	1321.453	125.787	4157.380	14.840	1008.943	582.899

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.379	1.722	—	0.963	3.481	-3.383	1.540	-4.900	-6.229	—	—	—	—

No JSON data available for plots.

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