Hg_chrom5_TN10mRNA_10698
Organism: Heterodera glycines Gene Locus: chr5:9211018-9212420 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.151 | 0.708 | 0.672 | 0.108 | 0.833 | 0.541 | 2.597 | 2.165 | 1.492 | 0.492 | 1.528 | 1.804 | 0.999 | 1.325 | 1.763 | 0.426 | 1.082 | 2.498 | 0.764 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10074
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
28-48
|
0.995
|
4-25
|
0.999
|
— | — |
0.000
|
— | — |
0.102
|
0.194
|
0.046
|
0.088
|
0.397
|
0.129
|
0.204
|
0.064
|
0.385
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17406.t1
|
— | — |
KAH7713648.1 Protein Y51B9A.6 b [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.924|GO:0009987_0.798|GO:0005575_0.784|GO:0110165_0.782|GO:0003674_0.750|GO:0016020_0.674|GO:0051179_0.646|GO:0006810_0.639|GO:0051234_0.639|GO:0055085_0.613|GO:0005215_0.583|GO:0005622_0.583|GO:0005737_0.583|GO:0022857_0.583|GO:0071944_0.553|GO:0043226_0.546|GO:0043227_0.546|GO:0043229_0.542|GO:0005886_0.533|GO:0043231_0.531|GO:0015711_0.510|GO:0022804_0.504
|
IPR011701+40-146+|IPR036259+25-153_38-147+
|
— |
PF07690+40-146+Major_Facilitator_Superfamily
|
— |
PTHR45757+40-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
17510.650
|
10.373
|
12.000
|
19.481
|
17.532
|
38.312
|
61.688
|
14.935
|
4.545
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
32.906
|
0.767
|
1.870
|
2.479
|
3.612
|
1.272
|
7.917
|
9.087
|
0.514
|
133.453
|
76.479
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.659
|
2.741
|
— |
-7.375
|
— |
-4.868
|
— | — |
No JSON data available for plots.