Hg_chrom5_TN10mRNA_10699
Organism: Heterodera glycines Gene Locus: chr5:9213559-9213994 Feature type: polypeptideProtein Sequence
Length: 92
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.643 | 1.517 | 0.988 | 0.0 | 1.087 | 0.557 | 0.129 | 0.543 | 1.449 | 1.91 | 1.153 | 1.279 | 0.302 | 0.836 | 1.331 | 1.398 | 0.535 | 0.659 | 1.672 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10075
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.559
|
0.438
|
0.129
|
0.668
|
0.042
|
0.097
|
0.228
|
0.013
|
0.103
|
0.633
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002245
|
2.000
|
2.000
|
Hsc_gene_11993.t1;Hsc_gene_9736.t1
|
— | — |
P42643.3 14-3-3-like protein GF14 chi [Arabidopsis thaliana]
|
KAI3421033.1 14-3-3-like protein 2 [Globodera pallida]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.882|GO:0110165_0.865|GO:0008150_0.847|GO:0005622_0.773|GO:0009987_0.737|GO:0065007_0.715|GO:0016020_0.691|GO:0043226_0.681|GO:0050789_0.678|GO:0003674_0.669|GO:0005488_0.669|GO:0005737_0.610|GO:0043229_0.593|GO:0043227_0.584|GO:0050794_0.548|GO:0043231_0.524
|
IPR000308+6-32_15-88_33-59_60-89+|IPR023410+15-87+|IPR036815+8-92_16-88+
|
— |
PF00244+15-87+14-3-3_protein
|
— |
PTHR18860+15-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-92
|
8qtt_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
10228.810
|
9.812
|
2.500
|
27.174
|
5.435
|
48.913
|
51.087
|
15.217
|
11.957
|
48.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
7.756
|
2.450
|
2.727
|
9.261
|
11.960
|
13.524
|
8.634
|
9.527
|
0.000
|
12.151
|
6.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.780
|
1.885
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.