Hg_chrom5_TN10mRNA_10701
Organism: Heterodera glycines Gene Locus: chr5:9214484-9215475 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.085 | 1.455 | 1.149 | 1.111 | 0.684 | 0.556 | 1.0 | 1.778 | 1.171 | 0.606 | 1.961 | 0.37 | 1.538 | 1.769 | 0.571 | 1.093 | 0.404 | 1.538 | 1.373 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10076
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
1.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.403
|
0.147
|
0.009
|
0.637
|
0.172
|
0.086
|
0.189
|
0.025
|
0.114
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000313
|
7.000
|
2.000
|
Hsc_gene_17414.t1;Hsc_gene_23528.t1
|
— | — |
D3ZDK2.1 Ubiquitin-conjugating enzyme E2 D1 [Rattus norvegicus]
|
XP_058476861.1 ubiquitin-conjugating enzyme E2 D1b [Solea solea]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.874|GO:0003674_0.790|GO:0008152_0.725|GO:0044238_0.711|GO:0043170_0.697|GO:0003824_0.691|GO:0019538_0.666|GO:0016740_0.648|GO:0140096_0.639|GO:0016746_0.618|GO:0016755_0.613|GO:0019787_0.613|GO:0004842_0.611
|
IPR000608+1-149_4-144_5-143+|IPR016135+1-150_3-149+|IPR023313+76-91+|IPR050113+2-148+
|
SM00212+4-149+
|
PF00179+5-143+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000101+1-149+Ubiquitin-conjugating_enzyme_E2_D2
|
PTHR24067+2-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-150
|
6d4p_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
17342.780
|
5.703
|
-1.500
|
29.333
|
10.000
|
47.333
|
52.667
|
14.667
|
14.667
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
203.196
|
9.147
|
4.019
|
16.472
|
45.569
|
335.870
|
17.940
|
384.463
|
0.000
|
583.928
|
333.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.424
|
— |
2.149
|
1.435
|
2.896
|
-4.216
|
— |
-4.276
|
-9.978
|
4.899
|
— | — | — |
No JSON data available for plots.