Hg_chrom5_TN10mRNA_10705
Organism: Heterodera glycines Gene Locus: chr5:9233767-9241009 Feature type: polypeptideProtein Sequence
Length: 667
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 1.151 | 0.736 | 0.775 | 1.149 | 1.422 | 0.732 | 1.124 | 1.433 | 1.418 | 0.704 | 1.587 | 1.416 | 0.865 | 0.918 | 0.964 | 0.909 | 0.84 | 0.461 | 0.838 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10080
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
5-46
|
0.828
|
25-45
|
1.000
|
— | — |
0.000
|
— | — |
0.120
|
0.877
|
0.017
|
0.245
|
0.081
|
0.064
|
0.135
|
0.034
|
0.094
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001331
|
3.000
|
2.000
|
Hsc_gene_17409.t1;Hsc_gene_17409.t2
|
Hsc_gene_17409.t1;Hsc_gene_17409.t2
|
— |
Q9H845.1 Complex I assembly factor ACAD9, mitochondrial [Homo sapiens]
|
KAI1724909.1 acyl-CoA dehydrogenase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016627|GO:0050660
|
GO:0005575_0.805|GO:0110165_0.792|GO:0008150_0.755|GO:0003674_0.731|GO:0005622_0.730|GO:0009987_0.700|GO:0005737_0.680|GO:0016020_0.673|GO:0043226_0.616|GO:0003824_0.612|GO:0043229_0.609|GO:0008152_0.597|GO:0043227_0.578|GO:0044238_0.576|GO:0044237_0.567|GO:0043231_0.564|GO:0016491_0.530|GO:0016627_0.517|GO:0044281_0.503
|
IPR009075+349-465+|IPR009100+129-333+|IPR013786+136-222+|IPR036250+348-469+|IPR037069+134-224+|IPR046373+225-335+|IPR049448+537-649+
|
— |
PF00441+349-465+Acyl-CoA_dehydrogenase,_C-terminal_domain|PF02771+136-222+Acyl-CoA_dehydrogenase,_N-terminal_domain|PF21343+537-649+ACAD9/ACADV,_C-terminal_domain
|
— |
PTHR43884+131-467+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-667
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
74321.160
|
6.013
|
-4.500
|
22.339
|
10.795
|
45.127
|
54.873
|
11.394
|
10.945
|
47.976
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1451.636
|
928.062
|
950.923
|
1797.363
|
2424.460
|
1835.005
|
1956.151
|
1035.248
|
989.070
|
1511.400
|
1287.544
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.194
|
0.817
|
1.027
|
0.400
|
-0.387
|
— |
-0.932
|
1.062
|
— | — | — | — | — |
No JSON data available for plots.