Hg_chrom5_TN10mRNA_10707
Organism: Heterodera glycines Gene Locus: chr5:9241702-9243089 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.514 | 1.937 | 0.612 | 1.578 | 0.607 | 0.493 | 0.592 | 1.315 | 1.04 | 0.986 | 1.74 | 1.315 | 0.683 | 1.208 | 0.592 | 0.97 | 0.897 | 1.365 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10081
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.575
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.677
|
0.158
|
0.108
|
0.629
|
0.029
|
0.108
|
0.040
|
0.093
|
0.133
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010011
|
1.000
|
1.000
|
Hsc_gene_17408.t1
|
Hsc_gene_17408.t1
|
— |
G5ECU1.1 Skp1-related protein [Caenorhabditis elegans]
|
AHW98770.1 S-phase kinase-associated protein 1 [Globodera rostochiensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.858|GO:0009987_0.688|GO:0005575_0.612|GO:0110165_0.608|GO:0065007_0.588|GO:0050789_0.576|GO:0050794_0.522|GO:0005622_0.521|GO:0008152_0.513|GO:0050896_0.511
|
IPR001232+3-119+|IPR011333+2-169_5-76+|IPR016072+121-167+|IPR016073+5-74+|IPR016897+1-169_7-166+|IPR036296+92-167+
|
SM00512+3-119+
|
PF01466+121-167+Skp1_family,_dimerisation_domain|PF03931+5-74+Skp1_family,_tetramerisation_domain
|
G3DSA:3.30.710.10:FF:000018+3-169+S-phase_kinase-associated_protein_1
|
PTHR11165+7-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-169
|
1.000
|
1-161
|
6o60_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
19317.660
|
4.327
|
-12.000
|
33.728
|
8.876
|
52.663
|
47.337
|
13.609
|
20.118
|
50.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2287.088
|
1043.581
|
1879.218
|
2116.562
|
2743.882
|
2833.074
|
2697.972
|
2965.229
|
1549.087
|
2739.376
|
2229.252
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
0.883
|
0.280
|
0.342
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.