SCN Proteipedia

Hg_chrom5_TN10mRNA_10709

Organism: Heterodera glycines Gene Locus: chr5:9243671-9253215 Feature type: polypeptide

Protein Sequence

Length: 1,067

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.981	1.308	1.312	1.034	1.109	1.514	0.703	1.453	0.979	1.001	0.454	1.103	1.224	0.703	1.454	1.071	1.183	0.923	0.505	0.303	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10082	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.622

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.766	0.289	0.007	0.409	0.029	0.105	0.090	0.029	0.030	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002246	3.000	1.000	Hsc_gene_17407.t1	—	—	P54279.2 Mismatch repair endonuclease PMS2 [Mus musculus]	KAH7727628.1 mismatch repair endonuclease PMS2 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0006298\|GO:0016887\|GO:0030983\|GO:0032300\|GO:0140664	GO:0008150_0.911\|GO:0005575_0.889\|GO:0110165_0.870\|GO:0009987_0.820\|GO:0005622_0.789\|GO:0050896_0.717\|GO:0051716_0.681\|GO:0016020_0.642\|GO:0043226_0.636\|GO:0006950_0.629\|GO:0008152_0.624\|GO:0043229_0.615\|GO:0044238_0.611\|GO:0043170_0.608\|GO:0006139_0.562\|GO:0033554_0.562\|GO:0016043_0.559\|GO:0071840_0.559\|GO:0043227_0.554\|GO:0006974_0.548\|GO:0090304_0.548\|GO:0043231_0.541\|GO:0006259_0.502	IPR002099+12-521+\|IPR013507+268-383_284-378+\|IPR014721+251-382+\|IPR014762+102-108+\|IPR014790+828-1028_829-904+\|IPR020568+278-383+\|IPR036890+8-225_26-218+\|IPR037198+826-907_969-1059+\|IPR038973+12-1065+\|IPR042120+831-867_1024-1059+\|IPR042121+868-908_969-1023+	SM00853+828-1028+\|SM01340+268-383+	PF01119+284-378+DNA_mismatch_repair_protein,_C-terminal_domain\|PF08676+829-904+MutL_C_terminal_dimerisation_domain\|PF13589+31-133+Histidine_kinase-,_DNA_gyrase_B-,_and_HSP90-like_ATPase	G3DSA:3.30.565.10:FF:000017+11-216+PMS1_homolog_1,_mismatch_repair_system_component	PTHR10073+12-1065+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-7;414-621;756-816	3.000	8-413;622-755;817-1067	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.548	118360.680	5.133	-24.500	26.898	8.997	53.140	46.860	13.027	13.871	54.639

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	1027.921	1090.699	1110.554	984.892	1010.207	808.527	1262.846	661.943	517.051	1510.742	1084.874

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.204	-0.284	—	—	-0.306	0.653	-0.396	1.075	—	—	—	—	—

No JSON data available for plots.

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