Hg_chrom5_TN10mRNA_10710
Organism: Heterodera glycines Gene Locus: chr5:9254769-9260285 Feature type: polypeptideProtein Sequence
Length: 563
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 0.95 | 0.388 | 0.551 | 0.296 | 1.366 | 0.74 | 1.066 | 1.421 | 1.536 | 0.511 | 1.463 | 2.714 | 0.991 | 0.725 | 1.294 | 0.903 | 1.103 | 1.503 | 0.627 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
46-66
|
0.980
|
34-61
|
1.000
|
— | — |
0.000
|
— | — |
0.119
|
0.103
|
0.010
|
0.157
|
0.290
|
0.436
|
0.338
|
0.191
|
0.642
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010012
|
1.000
|
1.000
|
Hsc_gene_17406.t1
|
Hsc_gene_17405.t1;Hsc_gene_17406.t1
|
— | — |
KAI1716539.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.957|GO:0009987_0.887|GO:0005575_0.833|GO:0110165_0.833|GO:0003674_0.770|GO:0006810_0.765|GO:0051179_0.765|GO:0051234_0.765|GO:0016020_0.744|GO:0055085_0.742|GO:0005215_0.702|GO:0022857_0.702|GO:0071944_0.684|GO:0005886_0.666|GO:0005622_0.529|GO:0043226_0.524|GO:0005737_0.514|GO:0043229_0.513|GO:0015711_0.509
|
IPR011701+114-477+|IPR020846+72-523+|IPR036259+103-282_114-527_315-533+
|
— |
PF07690+114-477+Major_Facilitator_Superfamily
|
— |
PTHR45757+19-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
563-563
|
1.000
|
1-562
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
62481.090
|
9.945
|
23.000
|
12.966
|
15.986
|
36.945
|
63.055
|
9.059
|
3.908
|
49.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
138.912
|
27.620
|
101.110
|
120.837
|
164.825
|
113.812
|
188.563
|
318.691
|
2.410
|
217.636
|
125.397
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.642
|
1.992
|
0.367
|
0.416
|
-0.519
|
0.737
|
1.377
|
-0.615
|
— |
5.896
|
— | — |
8.026
|
No JSON data available for plots.