SCN Proteipedia

Hg_chrom5_TN10mRNA_10716

Organism: Heterodera glycines Gene Locus: chr5:9281718-9292271 Feature type: polypeptide

Protein Sequence

Length: 1,096

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.944	1.231	0.796	0.755	0.623	0.842	0.869	1.232	1.44	1.443	0.553	1.717	1.47	0.772	1.08	1.134	1.107	0.899	1.123	0.832	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10089	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.916

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	—	—	—	—	—	—	—	0.001	—	—	0.074	0.087	0.028	0.210	0.175	0.645	0.326	0.004	0.689	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010017	1.000	1.000	Hsc_gene_17401.t1	Hsc_gene_17401.t1	—	P55014.2 Solute carrier family 12 member 1 [Mus musculus]	KAI1715597.1 solute carrier family 12 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006811\|GO:0015377\|GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.969\|GO:0009987_0.911\|GO:0005575_0.876\|GO:0110165_0.856\|GO:0006810_0.850\|GO:0051179_0.850\|GO:0051234_0.850\|GO:0003674_0.835\|GO:0016020_0.796\|GO:0071944_0.795\|GO:0055085_0.774\|GO:0005886_0.769\|GO:0006811_0.747\|GO:0005215_0.722\|GO:0022857_0.722\|GO:0034220_0.716\|GO:0098660_0.697\|GO:0015075_0.689\|GO:0006812_0.679\|GO:0098655_0.678\|GO:0015318_0.666\|GO:0008324_0.664\|GO:0030001_0.627\|GO:0098662_0.617\|GO:0015698_0.598\|GO:0006820_0.597\|GO:0006821_0.595\|GO:0098661_0.595\|GO:0098656_0.594\|GO:1902476_0.590\|GO:0022890_0.589\|GO:0046873_0.584\|GO:0022804_0.540\|GO:0008509_0.539\|GO:0015103_0.538\|GO:0015108_0.535\|GO:0022853_0.535\|GO:0015291_0.534\|GO:0015293_0.533\|GO:0015294_0.532\|GO:0015296_0.519\|GO:0015377_0.519	IPR004841+137-634+\|IPR004842+99-1094+\|IPR018491+643-1095+	—	PF00324+137-634+Amino_acid_permease\|PF03522+643-1095+Solute_carrier_family_12	G3DSA:1.20.1740.10:FF:000018+131-604+solute_carrier_family_12_member_3_isoform_X2	PTHR11827+99-1094+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-71	1.000	72-1096	6npk_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.808	121141.450	8.213	22.500	19.526	12.044	42.792	57.208	11.405	8.120	51.916

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	midnightblue	958.154	538.754	1077.848	524.904	407.721	852.040	328.854	2407.901	363.347	1617.653	1080.093

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.771	-0.175	-0.930	-0.396	1.077	-1.364	1.400	-2.732	—	—	—	—	—

No JSON data available for plots.

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