Hg_chrom5_TN10mRNA_10717
Organism: Heterodera glycines Gene Locus: chr5:9294779-9311904 Feature type: polypeptideProtein Sequence
Length: 2,117
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 1.659 | 1.005 | 0.538 | 1.315 | 1.139 | 0.489 | 1.016 | 1.638 | 1.487 | 1.467 | 1.417 | 1.601 | 0.527 | 0.868 | 0.79 | 0.728 | 0.766 | 1.308 | 0.625 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
RLIKRFK,KTPVKKRKAKKKSKT,KKIDNEFGIIGKIEKK,RKSADGIVLTFEKKKFV,KKMKSVDALSNDLRKGFK
|
35-55
|
0.993
|
45-70
|
0.998
|
1-25
|
— |
0.924
|
— |
0.000
|
0.555
|
0.186
|
0.010
|
0.559
|
0.096
|
0.138
|
0.175
|
0.057
|
0.118
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010018
|
1.000
|
1.000
|
Hsc_gene_17398.t1
|
Hsc_gene_17398.t1;Hsc_gene_17399.t1
|
— | — |
XP_037918442.1 poly(A) polymerase gamma-like [Hermetia illucens]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.704|GO:0110165_0.695|GO:0005622_0.650|GO:0016020_0.643|GO:0043226_0.605|GO:0008150_0.600|GO:0003674_0.594|GO:0043229_0.587|GO:0043227_0.553|GO:0043231_0.533
|
IPR007012+1823-1963+
|
— |
PF04928+1823-1963+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1812-2111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1172-1263
|
2.000
|
1-1171;1264-2117
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
245450.060
|
8.150
|
32.500
|
29.381
|
11.620
|
50.921
|
49.079
|
15.966
|
13.415
|
41.332
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1068.711
|
6.040
|
280.726
|
225.442
|
54.768
|
9.376
|
5.965
|
8.060
|
3563.756
|
1781.401
|
2545.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.309
|
5.084
|
— |
-2.072
|
-2.532
|
— | — | — | — |
-3.805
|
-4.574
|
— | — |