Hg_chrom5_TN10mRNA_10718
Organism: Heterodera glycines Gene Locus: chr5:9312156-9313878 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.269 | 0.343 | 0.805 | 0.915 | 0.59 | 1.815 | 2.388 | 0.885 | 0.656 | 0.438 | 0.626 | 0.694 | 0.656 | 2.496 | 0.843 | 0.927 | 0.677 | 0.715 | 0.227 | 0.434 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10091
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.067
|
0.054
|
0.006
|
0.105
|
0.520
|
0.293
|
0.465
|
0.002
|
0.632
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010019
|
1.000
|
1.000
|
Hsc_gene_17397.t1
|
Hsc_gene_17397.t1
|
— | — |
KAI1721762.1 cuticle collagen dpy-5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0005575_0.936|GO:0008150_0.933|GO:0110165_0.932|GO:0003674_0.899|GO:0032501_0.832|GO:0032502_0.823|GO:0048856_0.823|GO:0071944_0.814|GO:0007275_0.805|GO:0030312_0.776|GO:0009653_0.721|GO:0009791_0.684|GO:0042303_0.676|GO:0009886_0.670|GO:0010171_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0040032_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0031012_0.662|GO:0062023_0.662|GO:0005198_0.656|GO:0042302_0.650|GO:0042329_0.650|GO:0060102_0.540
|
IPR002486+11-63_15-63+|IPR050632+16-312+
|
SM01088+11-63+
|
PF01484+15-63+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+16-312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
113-339
|
1.000
|
1-112
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
33452.060
|
7.561
|
4.000
|
17.994
|
5.900
|
37.168
|
62.832
|
10.029
|
7.965
|
67.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
701.821
|
105.214
|
10.895
|
16.654
|
1589.353
|
5467.830
|
11.350
|
88.999
|
3.084
|
334.294
|
192.347
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.506
|
-2.797
|
0.725
|
6.545
|
1.799
|
-8.903
|
-6.054
|
-2.827
|
-6.814
|
— | — | — | — |
No JSON data available for plots.