Hg_chrom5_TN10mRNA_10720
Organism: Heterodera glycines Gene Locus: chr5:9321931-9323875 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 0.66 | 0.688 | 1.088 | 0.631 | 0.971 | 2.253 | 0.158 | 0.351 | 0.682 | 0.478 | 0.928 | 0.351 | 4.247 | 1.03 | 0.631 | 0.672 | 0.765 | 0.243 | 0.742 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10093
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PGRPGRPGKPGA
|
— | — | — | — | — | — |
0.071
|
— | — |
0.045
|
0.048
|
0.009
|
0.112
|
0.324
|
0.234
|
0.308
|
0.003
|
0.690
|
0.351
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010021
|
1.000
|
1.000
|
Hsc_gene_17390.t1
|
Hsc_gene_17390.t1
|
F23H12.4b
|
P17657.2 Cuticle collagen dpy-13 [Caenorhabditis elegans]
|
KAI1704483.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.940|GO:0032501_0.868|GO:0032502_0.852|GO:0048856_0.852|GO:0007275_0.824|GO:0005575_0.789|GO:0110165_0.788|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.647|GO:0030312_0.629|GO:0031012_0.559|GO:0062023_0.559
|
IPR002486+12-64_15-64+|IPR008160+168-224_233-290+|IPR050632+18-300+
|
SM01088+12-64+
|
PF01391+168-224_233-290+Collagen_triple_helix_repeat_(20_copies)|PF01484+15-64+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+18-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-317
|
1.000
|
1-106
|
9ius_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
31550.550
|
7.712
|
2.500
|
16.088
|
4.416
|
31.230
|
68.770
|
8.517
|
7.571
|
71.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
55.595
|
85.834
|
8.527
|
8.188
|
44.783
|
172.273
|
25.869
|
50.105
|
0.691
|
94.368
|
54.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.548
|
-3.529
|
— |
2.422
|
1.961
|
-2.726
|
-1.896
|
-0.808
|
-6.886
|
— | — | — | — |
No JSON data available for plots.