Hg_chrom5_TN10mRNA_10721
Organism: Heterodera glycines Gene Locus: chr5:9324275-9327523 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.868 | 1.351 | 0.754 | 0.143 | 0.622 | 1.49 | 0.84 | 2.49 | 0.738 | 0.449 | 0.377 | 2.197 | 1.268 | 2.793 | 0.931 | 0.83 | 0.544 | 1.446 | 0.958 | 1.22 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10094
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.433
|
0.303
|
0.004
|
0.615
|
0.321
|
0.376
|
0.137
|
0.009
|
0.165
|
0.438
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010022
|
1.000
|
1.000
|
Hsc_gene_17389.t1
|
Hsc_gene_17389.t1
|
— | — |
AAB61596.1 galectin [Globodera rostochiensis]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0008150_0.818|GO:0005575_0.785|GO:0110165_0.783|GO:0009987_0.712|GO:0003674_0.636|GO:0065007_0.575|GO:0050789_0.564|GO:0005488_0.558|GO:0050794_0.551|GO:0016020_0.537
|
IPR001079+12-143_13-140_14-141_14-143_18-142+|IPR013320+8-147+|IPR044156+3-140+
|
SM00276+12-143+|SM00908+18-142+
|
PF00337+14-141+Galactoside-binding_lectin
|
— |
PTHR11346+3-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-241
|
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
26715.160
|
7.118
|
4.000
|
19.917
|
14.938
|
40.664
|
59.336
|
12.033
|
7.884
|
58.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1717.726
|
3569.467
|
1390.763
|
976.794
|
931.510
|
2050.977
|
2410.883
|
4555.260
|
366.517
|
1283.043
|
890.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.588
|
-2.007
|
-0.402
|
— |
1.153
|
0.243
|
1.060
|
-0.782
|
— | — | — | — | — |
No JSON data available for plots.