Hg_chrom5_TN10mRNA_10724
Organism: Heterodera glycines Gene Locus: chr5:9341330-9341646 Feature type: polypeptideProtein Sequence
Length: 83
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 1.121 | 0.657 | 4.985 | 1.205 | 0.618 | 0.43 | 0.0 | 0.803 | 0.651 | 2.008 | 1.417 | 2.008 | 2.085 | 0.492 | 0.688 | 0.395 | 0.73 | 0.0 | 0.709 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10097
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17374
|
Hg_chrom5_TN10mRNA_10724
|
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-18
|
0.999
|
1.000
|
0.000
|
0.000
|
0.267
|
0.249
|
0.065
|
0.489
|
0.185
|
0.042
|
0.047
|
0.011
|
0.108
|
0.741
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002167
|
3.000
|
1.000
|
Hsc_gene_17376.t1
|
Hsc_gene_17374.t1;Hsc_gene_17376.t1;Hsc_gene_17380.t1;Hsc_gene_2933.t1
|
— | — |
KAI3412133.1 hypothetical protein GPALN_002175 [Globodera pallida]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002919+25-81+|IPR036084+24-82+
|
— |
PF01826+25-81+Trypsin_Inhibitor_like_cysteine_rich_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-83
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
9351.090
|
8.057
|
4.000
|
26.506
|
9.639
|
40.964
|
59.036
|
15.663
|
10.843
|
54.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
1339.079
|
323.164
|
118.170
|
14.967
|
198.888
|
8963.947
|
5713.755
|
197.423
|
0.000
|
34.601
|
19.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.684
|
-4.568
|
-2.869
|
3.697
|
5.510
|
-0.639
|
-5.625
|
5.003
|
— |
4.761
|
— | — | — |