Hg_chrom5_TN10mRNA_10732
Organism: Heterodera glycines Gene Locus: chr5:9383515-9384081 Feature type: polypeptideProtein Sequence
Length: 89
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.261 | 1.829 | 0.613 | 5.037 | 0.936 | 0.576 | 0.669 | 0.0 | 0.999 | 1.063 | 1.532 | 0.661 | 1.873 | 1.945 | 0.229 | 0.642 | 0.921 | 0.681 | 0.0 | 0.661 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10105
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10732
|
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-18
|
1.000
|
1.000
|
0.000
|
0.000
|
0.259
|
0.315
|
0.027
|
0.382
|
0.089
|
0.014
|
0.022
|
0.053
|
0.174
|
0.931
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010027
|
1.000
|
1.000
|
Hsc_gene_17362.t1
|
Hsc_gene_17362.t1;Hsc_gene_17366.t1
|
— | — |
KHJ89306.1 trypsin Inhibitor like cysteine rich domain protein [Oesophagostomum dentatum]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.948|GO:0005575_0.916|GO:0110165_0.916|GO:0009987_0.856|GO:0005576_0.839|GO:0032502_0.799|GO:0048856_0.792|GO:0048869_0.760|GO:0030154_0.754|GO:0005615_0.741|GO:0016020_0.719|GO:0005622_0.713|GO:0048468_0.712|GO:0022414_0.698|GO:0019953_0.687|GO:0048609_0.685|GO:0003006_0.684|GO:0007276_0.677|GO:0048232_0.677|GO:0005737_0.676|GO:0007283_0.676|GO:0022412_0.675|GO:0007281_0.674|GO:0043226_0.672|GO:0007286_0.670|GO:0048515_0.670|GO:0043229_0.647|GO:0043227_0.643|GO:0043231_0.638|GO:0031982_0.580|GO:0097708_0.562|GO:0031410_0.561|GO:0099503_0.560
|
IPR002919+30-83+|IPR036084+26-83+
|
— |
PF01826+30-83+Trypsin_Inhibitor_like_cysteine_rich_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
9851.600
|
7.594
|
2.000
|
20.225
|
8.989
|
40.449
|
59.551
|
11.236
|
8.989
|
58.427
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1159.523
|
235.456
|
222.164
|
25.490
|
1143.148
|
7406.488
|
75.169
|
342.397
|
488.022
|
1163.030
|
873.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.313
|
-3.344
|
-3.014
|
5.454
|
2.712
|
-6.613
|
-4.538
|
-2.045
|
— |
-4.164
|
— | — | — |