Hg_chrom5_TN10mRNA_10733
Organism: Heterodera glycines Gene Locus: chr5:9385054-9387770 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 1.688 | 0.806 | 0.0 | 1.075 | 1.137 | 0.768 | 1.411 | 1.792 | 1.144 | 1.222 | 2.135 | 2.016 | 0.853 | 0.576 | 0.806 | 0.331 | 0.978 | 0.62 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10107
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10733
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.391
|
0.255
|
0.034
|
0.464
|
0.285
|
0.180
|
0.175
|
0.007
|
0.211
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004199
|
2.000
|
1.000
|
Hsc_gene_17361.t2
|
Hsc_gene_17361.t1;Hsc_gene_17361.t2
|
— |
Q10941.1 Putative UDP-glucuronosyltransferase ugt-46 [Caenorhabditis elegans]
|
KAI1702768.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.835|GO:0003674_0.771|GO:0009987_0.718|GO:0003824_0.683|GO:0005575_0.675|GO:0110165_0.666|GO:0005622_0.638|GO:0008152_0.616|GO:0016740_0.613|GO:0005737_0.610|GO:0016020_0.607|GO:0043226_0.588|GO:0044237_0.585|GO:0016757_0.583|GO:0016758_0.582|GO:0043229_0.577|GO:0008194_0.576|GO:0043227_0.545|GO:0043231_0.530|GO:0050896_0.528
|
IPR002213+33-226_65-244+|IPR035595+134-176+|IPR050271+2-230+
|
— |
PF00201+33-226+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+2-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-248
|
6lf6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
28056.390
|
7.561
|
3.500
|
24.597
|
13.710
|
43.952
|
56.048
|
13.710
|
10.887
|
44.355
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
167.140
|
0.843
|
2.844
|
79.075
|
48.668
|
15.335
|
22.179
|
4.090
|
82.059
|
604.807
|
380.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.417
|
4.903
|
-0.728
|
-1.654
|
— |
-2.005
|
2.572
|
— | — |
-3.538
|
— | — |
No JSON data available for plots.