Hg_chrom5_TN10mRNA_10734
Organism: Heterodera glycines Gene Locus: chr5:9385054-9387820 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.758 | 0.687 | 0.0 | 1.357 | 1.044 | 0.658 | 1.599 | 1.809 | 1.179 | 1.365 | 1.71 | 2.019 | 0.783 | 0.831 | 0.706 | 0.429 | 0.837 | 0.671 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10107
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10734
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.376
|
0.319
|
0.054
|
0.551
|
0.291
|
0.147
|
0.194
|
0.012
|
0.210
|
0.318
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004199
|
2.000
|
1.000
|
Hsc_gene_17361.t2
|
Hsc_gene_17361.t1;Hsc_gene_17361.t2
|
— |
Q10941.1 Putative UDP-glucuronosyltransferase ugt-46 [Caenorhabditis elegans]
|
EGT52127.1 CBN-UGT-62 protein [Caenorhabditis brenneri]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.844|GO:0003674_0.778|GO:0009987_0.735|GO:0005575_0.680|GO:0003824_0.678|GO:0110165_0.673|GO:0005622_0.655|GO:0008152_0.625|GO:0016020_0.621|GO:0016740_0.614|GO:0043226_0.610|GO:0005737_0.603|GO:0043229_0.599|GO:0044237_0.594|GO:0016757_0.583|GO:0016758_0.582|GO:0008194_0.577|GO:0043227_0.557|GO:0043231_0.543|GO:0050896_0.528
|
IPR002213+129-322_161-340+|IPR035595+230-272+|IPR050271+83-326+
|
— |
PF00201+129-322+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+83-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
6lf6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
39563.620
|
9.456
|
9.500
|
28.198
|
13.953
|
47.384
|
52.616
|
16.279
|
11.919
|
40.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
54.512
|
1.232
|
2.209
|
38.184
|
29.105
|
7.138
|
12.261
|
1.812
|
6.202
|
199.359
|
116.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.824
|
4.231
|
— |
-2.012
|
— |
-2.082
|
2.905
|
— | — | — | — | — |
No JSON data available for plots.