Hg_chrom5_TN10mRNA_10736
Organism: Heterodera glycines Gene Locus: chr5:9401516-9404274 Feature type: polypeptideProtein Sequence
Length: 298
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.546 | 2.966 | 1.159 | 0.694 | 1.286 | 1.721 | 0.679 | 1.342 | 1.566 | 1.043 | 0.102 | 0.79 | 0.746 | 1.097 | 1.233 | 1.534 | 0.605 | 0.712 | 0.258 | 0.197 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10109
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10736
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.976
|
1.000
|
0.000
|
0.000
|
0.385
|
0.359
|
0.005
|
0.744
|
0.305
|
0.097
|
0.199
|
0.130
|
0.068
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010029
|
1.000
|
1.000
|
Hsc_gene_17359.t1
|
— | — |
A5WWA0.2 E3 ubiquitin-protein ligase znrf3 [Danio rerio]
|
OIT01203.1 ring-h2 finger protein atl33 [Nicotiana attenuata]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.892|GO:0005575_0.626|GO:0110165_0.622|GO:0003674_0.602|GO:0009987_0.568|GO:0065007_0.547|GO:0050789_0.505
|
IPR001841+169-216_170-215_170-216+|IPR013083+125-221+|IPR051826+33-219+
|
SM00184+170-215+
|
PF13639+169-216+Ring_finger_domain
|
— |
PTHR22765+33-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-177;288-298
|
1.000
|
178-287
|
8xft_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
32952.840
|
4.319
|
-18.000
|
23.490
|
6.376
|
57.383
|
42.617
|
9.396
|
14.094
|
56.376
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
446.987
|
0.157
|
2.329
|
376.879
|
111.500
|
14.928
|
12.241
|
3.739
|
213.874
|
1599.499
|
1005.660
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.676
|
11.129
|
7.486
|
-1.788
|
-2.886
|
— |
-2.106
|
1.849
|
— | — | — | — | — |