Hg_chrom5_TN10mRNA_10739
Organism: Heterodera glycines Gene Locus: chr5:9416703-9418142 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 1.103 | 2.3 | 1.908 | 2.042 | 0.709 | 1.882 | 1.581 | 0.439 | 0.694 | 0.958 | 0.698 | 0.549 | 0.684 | 0.403 | 0.508 | 0.778 | 0.479 | 0.0 | 0.233 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10112
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_17355;Hsc_gene_17357
|
Hg_chrom5_TN10mRNA_10739
|
27-Not_Clustered
|
0.513
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKKR
|
— | — | — | — | — |
0.623
|
0.119
|
0.000
|
— |
0.273
|
0.106
|
0.015
|
0.238
|
0.107
|
0.085
|
0.111
|
0.003
|
0.099
|
0.956
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000880
|
3.000
|
3.000
|
Hsc_gene_17355.t1;Hsc_gene_17357.t1;Hsc_gene_17371.t1
|
Hsc_gene_17355.t1;Hsc_gene_17357.t1
|
— | — | — |
CAL1705498
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+159-194_205-238+
|
SM00254+159-194_205-238+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-166
|
1.000
|
167-253
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
26344.950
|
3.937
|
-38.000
|
36.364
|
5.929
|
52.174
|
47.826
|
11.462
|
24.901
|
62.451
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
pink
|
94.856
|
0.000
|
0.430
|
17.892
|
17.434
|
1.884
|
45.647
|
40.511
|
9.675
|
361.315
|
210.612
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.589
|
5.465
|
— |
-3.199
|
4.614
|
4.317
|
— |
-5.360
|
— |
-4.270
|
— | — |