Hg_chrom5_TN10mRNA_10741
Organism: Heterodera glycines Gene Locus: chr5:9423596-9428988 Feature type: polypeptideProtein Sequence
Length: 690
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.624 | 1.989 | 0.817 | 0.05 | 1.86 | 1.115 | 0.293 | 1.087 | 1.417 | 1.214 | 2.196 | 0.597 | 0.684 | 0.446 | 1.154 | 1.035 | 0.879 | 0.681 | 0.334 | 0.725 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10114
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10741
|
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRVK,KKEKQMEQLKKELEKKEKE,KEKQMEQLKKELEKKEKEIAKLKKEVRRGGGGE
|
— | — | — | — |
1-16
|
0.983
|
0.796
|
0.000
|
0.000
|
0.768
|
0.072
|
0.010
|
0.499
|
0.027
|
0.048
|
0.043
|
0.015
|
0.123
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001333
|
2.000
|
3.000
|
Hsc_gene_17352.t1;Hsc_gene_17352.t2;Hsc_gene_17352.t3
|
Hsc_gene_17352.t1;Hsc_gene_17352.t2;Hsc_gene_17352.t3
|
— | — |
KAI3410500.1 hypothetical protein GPALN_004601 [Globodera pallida]
|
MEE2986362
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
191-690
|
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
80242.130
|
10.185
|
38.500
|
37.971
|
7.536
|
63.478
|
36.522
|
22.319
|
15.652
|
40.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
541.965
|
2.307
|
61.658
|
211.285
|
120.682
|
12.783
|
12.374
|
5.520
|
1286.549
|
1246.206
|
1263.496
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.515
|
6.387
|
1.887
|
-0.837
|
-3.226
|
— |
-1.324
|
1.305
|
— |
-2.434
|
-3.223
|
— | — |