Hg_chrom5_TN10mRNA_10743
Organism: Heterodera glycines Gene Locus: chr5:9432021-9437616 Feature type: polypeptideProtein Sequence
Length: 548
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.061 | 1.146 | 0.995 | 0.063 | 1.49 | 1.965 | 0.543 | 1.825 | 0.933 | 1.06 | 1.714 | 1.288 | 0.558 | 0.632 | 0.894 | 1.147 | 0.808 | 0.774 | 0.421 | 0.483 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10115
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10743
|
2-Not_Clustered
|
0.773
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKKLKNMK,RRKNGAKHEMVDKKHEK,KKVASLAERVQHPLFLKKR
|
— | — | — | — |
1-16
|
0.983
|
1.000
|
0.000
|
0.000
|
0.256
|
0.150
|
0.017
|
0.539
|
0.127
|
0.213
|
0.212
|
0.003
|
0.399
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010031
|
1.000
|
1.000
|
Hsc_gene_17351.t1
|
Hsc_gene_17351.t1
|
— | — |
KAI3410501.1 hypothetical protein GPALN_004602 [Globodera pallida]
|
GMI99235
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-293;376-548
|
1.000
|
294-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
61555.210
|
9.532
|
17.000
|
33.759
|
7.847
|
59.307
|
40.693
|
19.343
|
14.416
|
45.620
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
955.305
|
4.104
|
18.861
|
972.031
|
677.000
|
164.803
|
317.371
|
54.565
|
478.873
|
2992.030
|
1914.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.968
|
7.742
|
5.807
|
-0.553
|
-2.024
|
0.955
|
-1.711
|
2.685
|
— | — |
-1.952
|
— | — |