Hg_chrom5_TN10mRNA_10746
Organism: Heterodera glycines Gene Locus: chr5:9451247-9455723 Feature type: polypeptideProtein Sequence
Length: 670
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 1.458 | 1.031 | 0.206 | 1.443 | 1.186 | 0.515 | 0.522 | 1.592 | 0.867 | 1.606 | 1.141 | 0.663 | 1.033 | 1.462 | 1.557 | 0.807 | 0.43 | 0.574 | 1.01 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10118
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10746
|
21-Not_Clustered
|
0.792
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKKK,KRKR,RRRR,AKKTK,RKRAR,KKDTPPRLIVKKEKSR,KKKLSKKLGTLIRRINK
|
— | — | — | — |
1-24
|
0.603
|
0.608
|
0.000
|
0.000
|
0.239
|
0.192
|
0.029
|
0.732
|
0.123
|
0.194
|
0.164
|
0.027
|
0.478
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002247
|
1.000
|
3.000
|
Hsc_gene_17347.t1;Hsc_gene_17347.t2;Hsc_gene_17347.t3
|
Hsc_gene_17347.t1
|
— | — |
KAI3410503.1 hypothetical protein GPALN_004604 [Globodera pallida]
|
RGB37629
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98;146-471;667-670
|
2.000
|
99-145;472-666
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
76729.350
|
9.940
|
26.500
|
33.134
|
7.612
|
59.851
|
40.149
|
18.806
|
14.328
|
45.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
825.425
|
1.809
|
22.032
|
123.902
|
62.561
|
9.774
|
6.690
|
14.912
|
466.857
|
3170.463
|
2011.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.364
|
5.951
|
2.601
|
-1.016
|
-2.665
|
— | — |
-1.014
|
— | — |
-3.577
|
— | — |