Hg_chrom5_TN10mRNA_10750
Organism: Heterodera glycines Gene Locus: chr5:9480242-9482332 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 1.163 | 0.404 | 0.67 | 0.463 | 1.282 | 0.463 | 1.389 | 2.654 | 1.652 | 0.463 | 1.797 | 2.238 | 0.748 | 0.964 | 0.873 | 0.911 | 0.884 | 1.282 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10122
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
46-66
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.142
|
0.076
|
0.071
|
0.109
|
0.308
|
0.153
|
0.116
|
0.055
|
0.736
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000525
|
5.000
|
2.000
|
Hsc_gene_17339.t1;Hsc_gene_25071.t1
|
Hsc_gene_17339.t1
|
— | — |
KAI1709102.1 sre G protein-coupled chemoreceptor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.630
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+96-303+|IPR052860+17-349+
|
— |
PF03125+96-303+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47521+17-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
41335.020
|
9.457
|
15.000
|
15.556
|
15.833
|
37.222
|
62.778
|
10.556
|
5.000
|
41.389
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
72.629
|
6.236
|
9.717
|
14.782
|
10.553
|
51.161
|
49.061
|
8.271
|
0.000
|
261.586
|
149.478
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.107
|
— | — |
2.284
|
— |
-2.733
|
2.708
|
-8.851
|
4.743
|
-4.458
|
— | — |
No JSON data available for plots.