Hg_chrom5_TN10mRNA_10752
Organism: Heterodera glycines Gene Locus: chr5:9490129-9491245 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.046 | 2.215 | 0.481 | 0.912 | 0.617 | 1.221 | 1.197 | 1.323 | 1.176 | 1.073 | 0.321 | 3.112 | 1.323 | 0.611 | 0.972 | 0.831 | 1.301 | 0.722 | 1.221 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10124
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — |
52-85
|
0.995
|
42-80
|
0.960
|
— | — |
0.000
|
— | — |
0.242
|
0.156
|
0.079
|
0.287
|
0.514
|
0.272
|
0.322
|
0.056
|
0.205
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000173
|
1.000
|
11.000
|
Hsc_gene_17337.t1;Hsc_gene_20361.t1;Hsc_gene_20362.t1;Hsc_gene_20537.t1;Hsc_gene_22553.t1;Hsc_gene_22554.t1;Hsc_gene_22562.t1;Hsc_gene_22564.t1;Hsc_gene_22565.t1;Hsc_gene_22565.t2;Hsc_gene_22565.t3
|
Hsc_gene_17337.t1
|
— |
Q940T5.1 E3 ubiquitin-protein ligase RDUF2 [Arabidopsis thaliana]
|
XP_012082240.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Jatropha curcas];KDP29046.1 hypothetical protein JCGZ_16435 [Jatropha curcas]
|
PTQ40494
|
0.560
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.943|GO:0003674_0.851|GO:0003824_0.701|GO:0050896_0.685|GO:0016740_0.671|GO:0140096_0.671|GO:0016746_0.666|GO:0016755_0.657|GO:0019787_0.657|GO:0004842_0.656|GO:0005575_0.623|GO:0110165_0.613|GO:0008152_0.586|GO:0044238_0.565|GO:0009987_0.555|GO:0006950_0.541|GO:0016020_0.516
|
IPR001841+93-115+|IPR013083+82-138+
|
— |
PF13639+93-115+Ring_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-189
|
1.000
|
1-128
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
20579.420
|
7.695
|
3.500
|
15.873
|
10.582
|
43.915
|
56.085
|
9.524
|
6.349
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
14.375
|
3.050
|
5.959
|
2.395
|
2.827
|
1.983
|
2.631
|
9.998
|
1.382
|
51.037
|
29.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.211
|
— | — | — |
2.244
|
-1.792
|
— | — | — | — | — |
No JSON data available for plots.