Hg_chrom5_TN10mRNA_10753
Organism: Heterodera glycines Gene Locus: chr5:9500190-9501387 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.648 | 1.296 | 0.253 | 0.721 | 0.523 | 0.804 | 0.29 | 0.523 | 2.633 | 1.978 | 1.056 | 1.845 | 2.516 | 0.737 | 0.498 | 1.095 | 0.914 | 0.792 | 1.34 | 1.025 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10125
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
— |
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.902
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKKEAKNAQNWAKIEKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.183
|
0.069
|
0.013
|
0.074
|
0.199
|
0.096
|
0.119
|
0.099
|
0.771
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004201
|
1.000
|
2.000
|
Hsc_gene_17342.t1;Hsc_gene_19544.t1
|
Hsc_gene_19544.t1
|
— | — |
KAF7639023.1 Serpentine receptor class gamma [Meloidogyne graminicola]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0007606|GO:0016020
|
— |
IPR000609+2-252+|IPR017452+1-238+
|
— |
PF02118+2-252+Srg_family_chemoreceptor
|
— |
PTHR31552+2-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
33101.860
|
10.000
|
15.500
|
14.983
|
15.331
|
36.934
|
63.066
|
10.453
|
4.530
|
39.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
36.158
|
12.232
|
14.429
|
2.764
|
5.233
|
2.615
|
5.051
|
1.364
|
3.084
|
139.495
|
81.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.285
|
-2.280
|
— | — | — | — | — |
-5.577
|
— | — | — | — |
No JSON data available for plots.