Hg_chrom5_TN10mRNA_10756
Organism: Heterodera glycines Gene Locus: chr5:9511028-9515364 Feature type: polypeptideProtein Sequence
Length: 315
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.701 | 1.55 | 0.808 | 1.204 | 1.64 | 0.814 | 0.907 | 1.587 | 1.199 | 1.244 | 0.866 | 1.494 | 1.146 | 0.611 | 0.907 | 0.862 | 0.625 | 0.866 | 1.465 | 1.027 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10128
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.994
|
1.000
|
0.000
|
0.000
|
0.168
|
0.329
|
0.135
|
0.343
|
0.170
|
0.095
|
0.128
|
0.018
|
0.207
|
0.875
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002248
|
2.000
|
2.000
|
Hsc_gene_17333.t1;Hsc_gene_19516.t1
|
— | — |
Q8K1T0.2 Transmembrane protease serine 3 [Mus musculus]
|
XP_037298546.1 trypsin-1 isoform X2 [Manduca sexta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.762|GO:0005575_0.721|GO:0110165_0.721|GO:0003674_0.592
|
IPR001254+45-304_46-307_46-309_53-304+|IPR001314+82-97_145-159_252-264+|IPR009003+6-310+|IPR018114+92-97+|IPR033116+253-264+|IPR043504+40-310+|IPR051333+12-311+
|
SM00020+45-304+
|
PF00089+53-304+Trypsin
|
G3DSA:2.40.10.10:FF:000068+59-170+transmembrane_protease_serine_2
|
PTHR24260+12-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
35732.450
|
5.134
|
-8.000
|
27.619
|
12.698
|
47.302
|
52.698
|
13.333
|
14.286
|
46.984
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
499.512
|
2.466
|
8.539
|
6.119
|
8.127
|
367.383
|
17.044
|
3876.423
|
7.904
|
572.151
|
330.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.562
|
— | — | — |
5.518
|
-4.420
|
3.301
|
-7.689
|
— | — | — | — | — |