Hg_chrom5_TN10mRNA_10757
Organism: Heterodera glycines Gene Locus: chr5:9517049-9517383 Feature type: polypeptideProtein Sequence
Length: 87
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.267 | 1.337 | 0.418 | 5.153 | 0.575 | 0.295 | 0.547 | 0.575 | 1.533 | 1.243 | 2.786 | 0.676 | 0.958 | 1.768 | 0.235 | 0.985 | 0.377 | 0.348 | 0.0 | 1.014 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10129
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_17335;Hsc_gene_19543
|
— |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKKCNCSCECLPGLFRNKK,KKCNCSCECLPGLFRNKKS
|
— | — | — | — |
1-19
|
0.999
|
1.000
|
0.000
|
0.000
|
0.235
|
0.221
|
0.024
|
0.392
|
0.116
|
0.015
|
0.057
|
0.044
|
0.183
|
0.913
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010036
|
1.000
|
1.000
|
Hsc_gene_19543.t1
|
Hsc_gene_17335.t1;Hsc_gene_19543.t1;Hsc_gene_3790.t1
|
— | — |
XP_018392608.1 PREDICTED: chymotrypsin inhibitor [Cyphomyrmex costatus]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
9735.830
|
9.108
|
12.500
|
26.437
|
8.046
|
42.529
|
57.471
|
20.690
|
5.747
|
50.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
715.828
|
25.556
|
62.087
|
695.248
|
426.330
|
50.493
|
71.133
|
93.016
|
809.451
|
1990.712
|
1484.457
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.046
|
4.626
|
3.596
|
-0.736
|
-3.064
|
0.503
|
0.784
|
— | — | — | — | — | — |