Hg_chrom5_TN10mRNA_10758
Organism: Heterodera glycines Gene Locus: chr5:9519892-9520603 Feature type: polypeptideProtein Sequence
Length: 86
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.27 | 1.893 | 0.423 | 5.213 | 0.775 | 1.789 | 0.554 | 0.581 | 1.292 | 0.786 | 1.586 | 1.368 | 1.292 | 1.565 | 0.712 | 0.831 | 0.572 | 0.352 | 0.0 | 0.684 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10130
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-18
|
1.000
|
1.000
|
0.000
|
0.000
|
0.189
|
0.338
|
0.045
|
0.247
|
0.102
|
0.023
|
0.040
|
0.021
|
0.204
|
0.966
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010037
|
1.000
|
1.000
|
Hsc_gene_19538.t1
|
Hsc_gene_19538.t1
|
— | — |
XP_054089255.1 chymotrypsin inhibitor-like [Zeugodacus cucurbitae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.923|GO:0110165_0.922|GO:0009987_0.871|GO:0032502_0.818|GO:0048856_0.805|GO:0005576_0.768|GO:0030154_0.768|GO:0048869_0.768|GO:0005622_0.752|GO:0016020_0.727|GO:0048468_0.717|GO:0022414_0.702|GO:0005615_0.701|GO:0043226_0.700|GO:0019953_0.690|GO:0048609_0.689|GO:0003006_0.688|GO:0043229_0.686|GO:0007276_0.679|GO:0007283_0.678|GO:0048232_0.678|GO:0007281_0.676|GO:0022412_0.676|GO:0005737_0.672|GO:0007286_0.670|GO:0048515_0.670|GO:0043227_0.666|GO:0043231_0.650|GO:0031982_0.568|GO:0097708_0.555|GO:0031410_0.554|GO:0099503_0.554
|
IPR002919+36-81+|IPR036084+36-82+
|
— |
PF01826+36-81+Trypsin_Inhibitor_like_cysteine_rich_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-86
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
9728.430
|
8.308
|
6.500
|
22.093
|
8.140
|
46.512
|
53.488
|
15.116
|
6.977
|
52.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
719.084
|
21.218
|
364.397
|
1913.962
|
261.313
|
27.368
|
20.714
|
288.242
|
1729.500
|
762.412
|
1176.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.872
|
6.358
|
2.502
|
-2.904
|
-3.242
|
— |
3.297
|
-3.656
|
— | — | — | — | — |