Hg_chrom5_TN10mRNA_10759
Organism: Heterodera glycines Gene Locus: chr5:9521706-9530542 Feature type: polypeptideProtein Sequence
Length: 555
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.88 | 1.147 | 0.435 | 1.141 | 1.063 | 0.772 | 1.802 | 1.001 | 1.51 | 0.71 | 1.272 | 1.201 | 0.866 | 1.103 | 1.004 | 0.62 | 1.31 | 1.386 | 0.583 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10131
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.435
|
0.231
|
0.025
|
0.635
|
0.200
|
0.417
|
0.286
|
0.035
|
0.283
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010038
|
1.000
|
1.000
|
Hsc_gene_19537.t1
|
Hsc_gene_19537.t1;Hsc_gene_19537.t2
|
— |
P93738.1 PUTATIVE PSEUDOGENE: Putative actin-9 [Arabidopsis thaliana]
|
KAI1713279.1 actin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.854|GO:0110165_0.844|GO:0005622_0.735|GO:0008150_0.729|GO:0009987_0.662|GO:0005737_0.637|GO:0043226_0.630|GO:0016020_0.587|GO:0043229_0.569
|
IPR004000+163-541_163-554_187-532+|IPR043129+163-329_324-541+
|
SM00268+163-554+
|
PF00022+163-541+Actin
|
— |
PTHR11937+187-532+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17
|
1.000
|
18-555
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
62131.840
|
5.888
|
-7.000
|
26.847
|
11.712
|
45.586
|
54.414
|
13.694
|
13.153
|
49.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
979.323
|
1635.195
|
1419.905
|
812.835
|
527.324
|
1091.794
|
760.892
|
1201.888
|
392.921
|
1196.160
|
851.915
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.432
|
-1.145
|
-0.697
|
-0.656
|
1.064
|
-0.510
|
— |
-0.518
|
— | — | — | — | — |
No JSON data available for plots.