Hg_chrom5_TN10mRNA_10761
Organism: Heterodera glycines Gene Locus: chr5:9539321-9539974 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.465 | 1.24 | 0.97 | 0.23 | 0.556 | 0.513 | 0.635 | 1.667 | 1.778 | 1.441 | 1.212 | 1.961 | 1.667 | 0.641 | 0.816 | 1.238 | 1.093 | 1.111 | 0.513 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10133
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.354
|
0.140
|
0.479
|
0.322
|
0.118
|
0.172
|
0.205
|
0.236
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000865
|
3.000
|
3.000
|
Hsc_gene_23603.t1;Hsc_gene_5223.t1;Hsc_gene_5223.t2
|
— | — | — |
KIH65393.1 dimerization domain protein, hAT family [Ancylostoma duodenale]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.891|GO:0110165_0.883|GO:0016020_0.830|GO:0003674_0.824|GO:0005622_0.821|GO:0005737_0.813|GO:0043226_0.793|GO:0043229_0.782|GO:0043227_0.770|GO:0043231_0.760|GO:0005488_0.734|GO:0005515_0.704|GO:0042802_0.665|GO:0005634_0.598|GO:0031974_0.560|GO:0043233_0.560|GO:0070013_0.560|GO:0031981_0.554|GO:0005654_0.547
|
IPR012337+62-142+|IPR052035+3-138+
|
— | — | — |
PTHR46481+3-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
17061.870
|
9.791
|
7.500
|
24.000
|
14.000
|
46.667
|
53.333
|
15.333
|
8.667
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.383
|
0.600
|
1.867
|
0.997
|
0.682
|
0.863
|
0.000
|
0.839
|
0.000
|
3.858
|
2.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.