SCN Proteipedia

Hg_chrom5_TN10mRNA_10763

Organism: Heterodera glycines Gene Locus: chr5:9547260-9552824 Feature type: polypeptide

Protein Sequence

Length: 667

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.75	1.011	0.681	0.62	0.75	1.038	0.482	1.349	1.732	1.398	0.84	1.058	1.957	1.124	1.193	0.835	1.131	0.818	1.73	1.102	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10135	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.593

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.097	0.154	0.129	0.183	0.237	0.526	0.393	0.007	0.681	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010039	1.000	1.000	Hsc_gene_19535.t1	Hsc_gene_19535.t1;Hsc_gene_19536.t1	—	P34410.3 TWiK family of potassium channels protein 7 [Caenorhabditis elegans]	KAI1716026.1 ion channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0005515\|GO:0016020\|GO:0071805	GO:0008150_0.967\|GO:0009987_0.873\|GO:0051179_0.850\|GO:0003674_0.838\|GO:0006810_0.826\|GO:0051234_0.826\|GO:0055085_0.745\|GO:0005575_0.737\|GO:0110165_0.735\|GO:0006811_0.734\|GO:0034220_0.706\|GO:0005215_0.695\|GO:0006812_0.694\|GO:0022857_0.693\|GO:0016020_0.688\|GO:0030001_0.686\|GO:0098660_0.678\|GO:0005886_0.676\|GO:0071944_0.676\|GO:0015075_0.674\|GO:0015267_0.671\|GO:0022803_0.671\|GO:0005216_0.665\|GO:0098655_0.663\|GO:0098662_0.659\|GO:0015318_0.641\|GO:0008324_0.639\|GO:0006813_0.635\|GO:0005261_0.626\|GO:0022890_0.623\|GO:0046873_0.623\|GO:0071805_0.609\|GO:0005267_0.585\|GO:0015079_0.585	IPR003280+34-382_139-167_303-312+\|IPR003961+420-497_421-488_498-578_500-593_501-585_501-590+\|IPR013099+134-183_271-343+\|IPR013783+414-493_494-593+\|IPR036116+418-489_494-591+	SM00060+420-497_498-578+	PF00041+501-585+Fibronectin_type_III_domain\|PF07885+134-183_271-343+Ion_channel	—	PTHR11003+34-382+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	626-667	1.000	1-625	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.794	77133.690	9.637	30.000	22.339	15.742	43.478	56.522	14.093	8.246	44.378

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	117.032	26.711	132.220	40.053	23.236	33.870	19.049	56.086	9.346	380.796	221.603

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.081	—	-1.614	-0.823	0.562	-0.823	0.625	-1.420	—	—	—	—	—

No JSON data available for plots.

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