Hg_chrom5_TN10mRNA_10764
Organism: Heterodera glycines Gene Locus: chr5:9555005-9567102 Feature type: polypeptideProtein Sequence
Length: 950
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.567 | 1.148 | 1.125 | 1.14 | 1.269 | 0.614 | 0.947 | 1.404 | 1.181 | 0.925 | 1.672 | 1.257 | 0.789 | 0.945 | 0.947 | 0.708 | 0.829 | 0.729 | 1.3 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10136
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.739
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RKNQANMEHLRRNRD
|
— | — |
2-22
|
0.985
|
1-23
|
0.959
|
0.820
|
1.000
|
1.000
|
0.093
|
0.059
|
0.008
|
0.252
|
0.296
|
0.532
|
0.377
|
0.042
|
0.872
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002249
|
1.000
|
3.000
|
Hsc_gene_19533.t1;Hsc_gene_19533.t2;Hsc_gene_19533.t3
|
Hsc_gene_19533.t1;Hsc_gene_19533.t2;Hsc_gene_19533.t3
|
— |
Q19238.3 Putative tyrosine-protein kinase F09A5.2 [Caenorhabditis elegans]
|
KAI1720651.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0005524|GO:0006468
|
GO:0008150_0.987|GO:0065007_0.962|GO:0050789_0.948|GO:0009987_0.935|GO:0050794_0.904|GO:0050896_0.824|GO:0003674_0.795|GO:0032502_0.786|GO:0048856_0.784|GO:0005575_0.780|GO:0110165_0.770|GO:0051716_0.764|GO:0023052_0.728|GO:0007154_0.726|GO:0048518_0.718|GO:0003824_0.717|GO:0140096_0.717|GO:0030154_0.710|GO:0048869_0.710|GO:0007165_0.704|GO:0016740_0.700|GO:0032501_0.695|GO:0048522_0.680|GO:0016772_0.661|GO:0016773_0.652|GO:0004672_0.650|GO:0016301_0.650|GO:0005622_0.633|GO:0005488_0.625|GO:0005886_0.604|GO:0016020_0.604|GO:0071944_0.604|GO:0007166_0.592|GO:0005515_0.587|GO:0007275_0.580|GO:0008152_0.572|GO:0048583_0.563|GO:0048731_0.546|GO:0043170_0.543|GO:0023051_0.540|GO:0010646_0.536|GO:0044238_0.534|GO:0048468_0.533|GO:0044237_0.531|GO:0050793_0.512
|
IPR000719+597-892+|IPR001245+600-890_687-700_749-767_798-808_817-839_861-883+|IPR008266+755-767+|IPR011009+578-890+|IPR020635+597-890+|IPR050122+60-893+
|
SM00219+597-890+
|
PF07714+600-890+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:1.10.510.10:FF:000994+691-903+Hypoxia_Inhibited_Receptor_tyrosine_kinase
|
PTHR24416+60-893+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
928-950
|
1.000
|
1-927
|
9kfu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
108473.270
|
5.305
|
-14.000
|
25.789
|
11.789
|
48.421
|
51.579
|
12.632
|
13.158
|
47.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkgreen
|
112795.019
|
508.797
|
938.293
|
1213.648
|
1464.688
|
2154.403
|
535.614
|
1629.943
|
650243.635
|
2628.461
|
280177.821
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
1.117
|
0.479
|
0.240
|
0.572
|
-2.001
|
-0.507
|
-1.466
|
7.856
|
-8.897
|
— | — | — |