Hg_chrom5_TN10mRNA_10766
Organism: Heterodera glycines Gene Locus: chr5:9572474-9574041 Feature type: polypeptideProtein Sequence
Length: 176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 2.114 | 1.136 | 0.392 | 0.568 | 1.603 | 0.406 | 1.136 | 1.263 | 1.305 | 0.43 | 2.005 | 1.894 | 1.093 | 0.812 | 1.055 | 0.559 | 0.344 | 3.059 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10138
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKPR
|
50-86
|
0.847
|
27-61
|
0.788
|
— | — |
0.000
|
— | — |
0.028
|
0.052
|
0.011
|
0.071
|
0.469
|
0.207
|
0.161
|
0.013
|
0.646
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001334
|
1.000
|
4.000
|
Hsc_gene_3222.t2;Hsc_gene_375.t1;Hsc_gene_375.t2;Hsc_gene_375.t3
|
— | — |
O01393.1 Innexin unc-9 [Caenorhabditis elegans]
|
KAF7631204.1 SWI/SNF complex subunit SMARCC2 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.834|GO:0005575_0.820|GO:0110165_0.820|GO:0009987_0.702|GO:0065007_0.611|GO:0003674_0.600|GO:0050789_0.599|GO:0051179_0.569|GO:0006810_0.558|GO:0051234_0.558|GO:0032501_0.524|GO:0030054_0.513
|
IPR000990+53-176_59-172_59-174_112-121_144-166+
|
— |
PF00876+59-172+Innexin
|
— |
PTHR11893+59-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
20515.120
|
5.124
|
-3.000
|
18.750
|
17.614
|
44.886
|
55.114
|
9.091
|
9.659
|
47.159
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
19.898
|
0.307
|
3.899
|
2.288
|
11.923
|
8.902
|
0.713
|
14.639
|
0.000
|
71.050
|
40.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.441
|
— | — |
2.357
|
— |
-3.637
|
— |
-4.222
|
-6.947
|
— | — | — | — |
No JSON data available for plots.