Hg_chrom5_TN10mRNA_10767
Organism: Heterodera glycines Gene Locus: chr5:9581804-9585134 Feature type: polypeptideProtein Sequence
Length: 326
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.392 | 1.569 | 0.837 | 0.423 | 1.022 | 0.865 | 0.657 | 1.534 | 1.295 | 1.575 | 0.604 | 1.804 | 1.789 | 0.826 | 1.565 | 1.008 | 1.056 | 0.79 | 0.944 | 0.902 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10139
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRK
|
— | — | — | — | — | — |
0.057
|
— | — |
0.055
|
0.119
|
0.027
|
0.247
|
0.254
|
0.211
|
0.158
|
0.012
|
0.560
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000843
|
4.000
|
2.000
|
Hsc_gene_11643.t1;Hsc_gene_14342.t1
|
— | — |
Q23027.2 Innexin-5 [Caenorhabditis elegans]
|
KAF7637426.1 Innexin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.884|GO:0110165_0.874|GO:0008150_0.831|GO:0009987_0.732|GO:0065007_0.627|GO:0050789_0.604|GO:0030054_0.597|GO:0003674_0.563|GO:0051179_0.551|GO:0006810_0.540|GO:0051234_0.540|GO:0032501_0.531|GO:0005911_0.513|GO:0070161_0.513
|
IPR000990+1-187_1-193_2-221_4-18_52-61_76-92+
|
— |
PF00876+1-187+Innexin
|
— |
PTHR11893+2-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
212-326
|
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
37810.320
|
8.464
|
8.000
|
25.460
|
13.804
|
49.080
|
50.920
|
14.724
|
10.736
|
44.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
20.129
|
5.673
|
17.313
|
12.740
|
51.623
|
36.055
|
28.678
|
48.031
|
2.056
|
11.481
|
7.442
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.380
|
1.031
|
— |
1.990
|
— | — | — |
-0.603
|
— | — | — | — | — |
No JSON data available for plots.