Hg_chrom5_TN10mRNA_10769
Organism: Heterodera glycines Gene Locus: chr5:9599031-9604144 Feature type: polypeptideProtein Sequence
Length: 521
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.183 | 0.759 | 0.593 | 0.529 | 0.64 | 1.034 | 0.96 | 1.056 | 1.408 | 1.66 | 0.262 | 0.903 | 2.186 | 0.701 | 0.744 | 1.234 | 1.227 | 1.018 | 1.181 | 0.677 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10141
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.066
|
0.088
|
0.010
|
0.173
|
0.388
|
0.806
|
0.542
|
0.028
|
0.505
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010041
|
1.000
|
1.000
|
Hsc_gene_19531.t1
|
Hsc_gene_19517.t1;Hsc_gene_19518.t1;Hsc_gene_19522.t1;Hsc_gene_19523.t1;Hsc_gene_19523.t2;Hsc_gene_19531.t1
|
— |
Q6PB15.1 UNC93-like protein MFSD11 [Xenopus laevis]
|
KAI1730488.1 ion channel regulatory protein UNC-93 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.908|GO:0110165_0.907|GO:0071944_0.656|GO:0005886_0.646|GO:0016020_0.646
|
IPR010291+71-495+|IPR036259+27-501_33-500+|IPR051617+28-503+
|
— |
PF05978+71-495+Ion_channel_regulatory_protein_UNC-93
|
— |
PTHR23294+28-503+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-521
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
56490.030
|
5.943
|
-3.500
|
14.587
|
13.820
|
38.004
|
61.996
|
7.486
|
7.102
|
52.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
670.585
|
819.980
|
764.498
|
670.761
|
582.388
|
765.072
|
552.222
|
1130.194
|
367.687
|
676.128
|
543.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.330
|
-0.427
|
— |
-0.237
|
0.409
|
-0.463
|
0.455
|
-0.892
|
— | — | — | — | — |
No JSON data available for plots.