Hg_chrom5_TN10mRNA_10770
Organism: Heterodera glycines Gene Locus: chr5:9610267-9613364 Feature type: polypeptideProtein Sequence
Length: 236
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.182 | 0.385 | 1.315 | 0.847 | 1.195 | 0.706 | 2.119 | 1.507 | 1.374 | 1.22 | 0.997 | 1.412 | 0.489 | 1.297 | 0.605 | 0.903 | 0.899 | 0.978 | 1.122 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10142
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_19516
|
— |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.999
|
1.000
|
0.000
|
0.000
|
0.171
|
0.276
|
0.126
|
0.395
|
0.072
|
0.027
|
0.053
|
0.090
|
0.184
|
0.825
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002248
|
2.000
|
2.000
|
Hsc_gene_17333.t1;Hsc_gene_19516.t1
|
Hsc_gene_17333.t1;Hsc_gene_19516.t1
|
— |
P56677.2 Suppressor of tumorigenicity 14 protein homolog [Mus musculus]
|
HEY3719025.1 serine protease [Roseiarcus sp.]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.740|GO:0005575_0.738|GO:0110165_0.721|GO:0003674_0.533
|
IPR001254+47-227_48-183_55-159+|IPR009003+7-157+|IPR018114+94-99+|IPR043504+33-165+|IPR051333+10-157+
|
SM00020+47-227+
|
PF00089+55-159+Trypsin
|
— |
PTHR24260+10-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
27077.650
|
10.058
|
22.000
|
25.847
|
14.407
|
45.339
|
54.661
|
18.644
|
7.203
|
42.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
117.157
|
3.223
|
4.212
|
1.687
|
1.943
|
26.510
|
8.708
|
506.534
|
4.466
|
301.907
|
174.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.765
|
-1.599
|
4.155
|
-5.723
|
— | — | — | — | — |