Hg_chrom5_TN10mRNA_10774
Organism: Heterodera glycines Gene Locus: chr5:9631372-9632596 Feature type: polypeptideProtein Sequence
Length: 296
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.236 | 0.236 | 0.369 | 0.815 | 0.056 | 1.819 | 0.322 | 0.676 | 0.3 | 0.73 | 0.205 | 0.596 | 0.751 | 10.85 | 0.276 | 0.724 | 0.055 | 0.205 | 0.0 | 1.391 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10146
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQYQPPPPPPPPPPP
|
— | — |
6-43
|
0.999
|
1-17
|
0.996
|
1.000
|
0.000
|
0.000
|
0.198
|
0.117
|
0.016
|
0.366
|
0.053
|
0.174
|
0.040
|
0.050
|
0.210
|
0.913
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001119
|
3.000
|
2.000
|
Hsc_gene_24837.t1;Hsc_gene_24838.t1
|
— | — | — |
XP_059609956.1 peritrophin-1-like [Phlebotomus argentipes]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0008061
|
— |
IPR002557+28-81_29-81_32-77+|IPR036508+25-79+
|
SM00494+29-81+
|
PF01607+32-77+Chitin_binding_Peritrophin-A_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
72-296
|
1.000
|
1-71
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.338
|
31302.530
|
7.568
|
3.000
|
6.419
|
8.784
|
19.932
|
80.068
|
4.054
|
2.365
|
73.311
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
66.225
|
1.996
|
1.012
|
5.014
|
3.769
|
10.152
|
743.150
|
7.537
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
2.421
|
— | — |
6.207
|
— |
6.759
|
— | — | — | — | — |