Hg_chrom5_TN10mRNA_10776
Organism: Heterodera glycines Gene Locus: chr5:9638719-9643755 Feature type: polypeptideProtein Sequence
Length: 448
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 1.609 | 0.731 | 0.154 | 1.376 | 1.087 | 0.611 | 1.116 | 1.389 | 1.297 | 1.488 | 1.444 | 0.868 | 0.558 | 0.729 | 0.957 | 0.951 | 0.778 | 0.172 | 1.313 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10148
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
mitochondria
|
KKKK,KKEAQQLFELRRKGL,RKLFDYYKQIVVQHQKQKR
|
41-68
|
0.817
|
— | — |
1-24
|
0.813
|
0.994
|
0.000
|
0.000
|
0.289
|
0.229
|
0.021
|
0.508
|
0.177
|
0.194
|
0.220
|
0.021
|
0.422
|
0.608
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002250
|
1.000
|
3.000
|
Hsc_gene_19501.t1;Hsc_gene_19501.t2;Hsc_gene_19509.t1
|
— | — |
P50995.1 Annexin A11 [Homo sapiens]
|
QLK97565.1 annexin [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.909|GO:0110165_0.903|GO:0016020_0.791|GO:0008150_0.780|GO:0003674_0.726|GO:0071944_0.721|GO:0005622_0.695|GO:0009987_0.670|GO:0043226_0.669|GO:0005488_0.633|GO:0043227_0.621|GO:0005886_0.610|GO:0005737_0.604|GO:0043229_0.594|GO:0043231_0.526|GO:0065007_0.523|GO:0050789_0.509|GO:0051179_0.509
|
IPR018502+109-184_114-182_124-182_297-370_301-368_320-368+|IPR037104+27-94_27-372_109-189_190-297_299-370+
|
SM00335+124-182_320-368+
|
PF00191+114-182_301-368+Annexin
|
— |
PTHR10502+28-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
369-448
|
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
50410.490
|
9.064
|
10.000
|
27.902
|
10.045
|
51.562
|
48.438
|
15.625
|
12.277
|
45.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
736.251
|
3.624
|
408.068
|
275.726
|
23.993
|
1.976
|
13.375
|
7.214
|
3409.823
|
388.488
|
1683.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.596
|
6.121
|
-0.457
|
-3.556
|
-3.580
|
2.760
|
— | — |
3.055
|
-3.449
|
— | — | — |