Hg_chrom5_TN10mRNA_10777
Organism: Heterodera glycines Gene Locus: chr5:9648061-9652417 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 2.052 | 0.891 | 0.93 | 0.98 | 1.508 | 0.642 | 1.225 | 2.015 | 1.126 | 0.891 | 3.893 | 2.111 | 0.424 | 0.75 | 1.015 | 0.362 | 0.483 | 0.189 | 0.433 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10149
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
31-52
|
0.863
|
45-85
|
0.971
|
— | — |
0.000
|
— | — |
0.663
|
0.230
|
0.009
|
0.556
|
0.070
|
0.095
|
0.053
|
0.034
|
0.117
|
0.258
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000316
|
1.000
|
8.000
|
Hsc_gene_18158.t1;Hsc_gene_18165.t1;Hsc_gene_18169.t1;Hsc_gene_19497.t1;Hsc_gene_23879.t1;Hsc_gene_23880.t1;Hsc_gene_23881.t1;Hsc_gene_4759.t1
|
— | — | — | — |
MBQ4529089
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
394-408
|
1.000
|
1-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
46531.800
|
6.491
|
0.000
|
22.794
|
11.765
|
46.814
|
53.186
|
12.010
|
10.784
|
42.892
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
342.311
|
2.447
|
86.690
|
68.238
|
14.908
|
9.966
|
6.070
|
5.545
|
1475.427
|
318.339
|
814.234
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.916
|
4.664
|
— |
-2.220
|
— | — | — | — | — |
-4.272
|
-4.266
|
— | — |
No JSON data available for plots.