Hg_chrom5_TN10mRNA_10782
Organism: Heterodera glycines Gene Locus: chr5:9692893-9697633 Feature type: polypeptideProtein Sequence
Length: 502
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.297 | 0.905 | 0.343 | 1.361 | 1.277 | 0.498 | 1.096 | 1.107 | 1.534 | 0.875 | 1.992 | 1.771 | 0.69 | 1.504 | 0.455 | 0.784 | 0.996 | 1.379 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10154
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.092
|
0.262
|
0.072
|
0.369
|
0.799
|
0.128
|
0.289
|
0.043
|
0.068
|
0.505
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002251
|
1.000
|
3.000
|
Hsc_gene_18386.t1;Hsc_gene_1855.t1;Hsc_gene_19492.t1
|
Hsc_gene_18386.t1;Hsc_gene_19492.t1;Hsc_gene_19493.t1
|
— |
Q27516.2 Putative cytochrome P450 CYP13A8 [Caenorhabditis elegans]
|
KAI1718574.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.850|GO:0003674_0.637|GO:0009987_0.571|GO:0008152_0.552|GO:0003824_0.516|GO:0005575_0.511|GO:0110165_0.509
|
IPR001128+46-492_340-353_374-385_436-445_445-456+|IPR002401+53-72_331-357_373-391_401-425_435-445_445-468+|IPR017972+438-447+|IPR036396+28-498_28-502+
|
— |
PF00067+46-492+Cytochrome_P450
|
— |
PTHR24301+33-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-502
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
58811.850
|
7.505
|
5.500
|
28.486
|
13.147
|
47.012
|
52.988
|
15.339
|
13.147
|
40.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
669.008
|
892.791
|
608.444
|
323.113
|
334.805
|
335.003
|
524.526
|
1206.774
|
424.569
|
1023.938
|
767.065
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.780
|
-1.604
|
-0.807
|
— | — |
0.657
|
1.753
|
-1.064
|
— | — | — | — | — |
No JSON data available for plots.