Hg_chrom5_TN10mRNA_10790
Organism: Heterodera glycines Gene Locus: chr5:9762700-9763792 Feature type: polypeptideProtein Sequence
Length: 231
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.453 | 0.906 | 1.338 | 1.045 | 1.659 | 0.444 | 0.773 | 1.299 | 1.635 | 0.819 | 1.312 | 2.801 | 1.443 | 0.416 | 1.06 | 0.618 | 0.852 | 0.918 | 0.333 | 1.655 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10162
|
— | — |
2.889
|
2.000
|
2.000
|
1.000
|
3.000
|
5.000
|
5.000
|
1.000
|
4.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.888
|
0.542
|
0.241
|
0.457
|
0.204
|
0.075
|
0.032
|
0.008
|
0.100
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010048
|
1.000
|
1.000
|
Hsc_gene_10097.t1
|
Hsc_gene_10097.t1;Hsc_gene_12283.t1;Hsc_gene_14821.t1;Hsc_gene_14822.t1;Hsc_gene_14822.t2;Hsc_gene_15286.t1;Hsc_gene_19616.t1;Hsc_gene_20801.t1;Hsc_gene_21944.t1;Hsc_gene_26678.t1;Hsc_gene_2680.t1;Hsc_gene_2975.t1;Hsc_gene_3213.t2;Hsc_gene_807.t1;Hsc_gene_808.t1;Hsc_gene_9533.t1
|
— |
Q01529.1 Probable DNA polymerase [Podospora anserina]
|
CAD2191126.1 unnamed protein product [Meloidogyne enterolobii];CAD2194135.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676
|
— |
IPR017964+88-96+|IPR023211+43-159+|IPR043502+33-166+
|
— | — | — |
PTHR33568+5-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
26943.840
|
5.239
|
-5.000
|
33.766
|
13.853
|
48.918
|
51.082
|
16.450
|
17.316
|
42.424
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
131.548
|
0.464
|
1.594
|
0.383
|
0.156
|
0.502
|
0.607
|
0.559
|
0.000
|
573.925
|
327.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-9.950
|
— |
-11.497
|
— | — |
No JSON data available for plots.