Hg_chrom5_TN10mRNA_10791
Organism: Heterodera glycines Gene Locus: chr5:9807052-9812183 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.635 | 1.191 | 0.621 | 1.059 | 1.706 | 1.094 | 0.569 | 0.853 | 1.403 | 1.499 | 0.802 | 0.903 | 1.375 | 0.689 | 1.254 | 0.975 | 0.895 | 0.931 | 0.919 | 1.004 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10163
|
— | — |
0.778
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKKVLLESAVVPAPRQKRD,RRTEGEEEDKRGQSRKMNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.078
|
0.068
|
0.029
|
0.134
|
0.389
|
0.242
|
0.143
|
0.050
|
0.842
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010049
|
1.000
|
1.000
|
Hsc_gene_26528.t1
|
Hsc_gene_26528.t1
|
— |
Q11095.3 Probable G-protein coupled receptor frpr-1 [Caenorhabditis elegans]
|
KAF7624715.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0005575_0.976|GO:0110165_0.976|GO:0008150_0.969|GO:0005886_0.962|GO:0016020_0.962|GO:0071944_0.962|GO:0009987_0.958|GO:0065007_0.912|GO:0050789_0.904|GO:0050794_0.864|GO:0050896_0.841|GO:0003674_0.835|GO:0051716_0.831|GO:0023052_0.815|GO:0007154_0.813|GO:0007165_0.778|GO:0007186_0.702|GO:0032501_0.647|GO:0005488_0.613|GO:0048518_0.557|GO:0048522_0.534|GO:0043226_0.505
|
IPR000276+89-113_123-144_172-194_342-368+|IPR017452+104-360+|IPR053326+64-399+
|
— | — | — |
PTHR47632+64-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
436-586
|
1.000
|
1-435
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
67273.970
|
5.372
|
-8.000
|
26.792
|
11.263
|
48.464
|
51.536
|
13.140
|
13.652
|
43.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
452.870
|
14.396
|
126.209
|
87.087
|
34.638
|
25.722
|
63.602
|
52.842
|
22.010
|
1813.115
|
1045.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.903
|
2.460
|
-0.425
|
-1.359
|
— |
1.316
|
0.943
|
— |
-6.474
|
— |
-5.238
|
— | — |
No JSON data available for plots.