SCN Proteipedia

Hg_chrom5_TN10mRNA_10799

Organism: Heterodera glycines Gene Locus: chr5:9946087-9955760 Feature type: polypeptide

Protein Sequence

Length: 904

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.171	0.617	1.066	0.877	1.235	0.964	0.461	1.106	1.18	1.54	0.788	1.562	1.014	0.702	1.174	1.059	1.016	1.19	0.34	0.618	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10171	—	—	1.111	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.302	0.144	0.011	0.549	0.320	0.434	0.506	0.017	0.278	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004206	3.000	0.000	0.000	Hsc_gene_1239.t1;Hsc_gene_1240.t1;Hsc_gene_16357.t1;Hsc_gene_16358.t1;Hsc_gene_19519.t1;Hsc_gene_24954.t1;Hsc_gene_24954.t2;Hsc_gene_24955.t1	—	Q9PUE4.2 Coatomer subunit gamma-2 [Danio rerio]	KAI1727601.1 coatomer gamma subunit appendage platform subdomain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030117\|GO:0030126	GO:0005575_0.894\|GO:0110165_0.884\|GO:0005622_0.797\|GO:0016020_0.761\|GO:0005737_0.742\|GO:0071944_0.737\|GO:0005886_0.713\|GO:0043226_0.695\|GO:0043229_0.666\|GO:0008150_0.661\|GO:0043227_0.658\|GO:0043231_0.634\|GO:0009987_0.601\|GO:0005773_0.528\|GO:0012505_0.517	IPR002553+22-547+\|IPR009028+797-903+\|IPR011989+17-320_337-561+\|IPR012295+786-904+\|IPR013040+632-782+\|IPR013041+623-786+\|IPR016024+24-563+\|IPR017106+1-904_3-903+\|IPR032154+797-903+\|IPR037067+620-783+	—	PF01602+22-547+Adaptin_N_terminal_region\|PF08752+632-782+Coatomer_gamma_subunit_appendage_platform_subdomain\|PF16381+797-903+Coatomer_subunit_gamma-1_C-terminal_appendage_platform	G3DSA:1.25.10.10:FF:000071+337-545+Coatomer_subunit_gamma\|G3DSA:1.25.10.10:FF:000382+18-320+Coatomer_subunit_gamma\|G3DSA:2.60.40.1480:FF:000001+622-783+Coatomer_subunit_gamma\|G3DSA:3.30.310.10:FF:000011+785-904+Coatomer_subunit_gamma	PTHR10261+3-903+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25	1.000	26-904	3tjz_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.638	100266.430	5.585	-11.000	26.438	8.407	46.460	53.540	13.164	13.274	50.111

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	2925.533	1720.774	1171.755	1821.927	2465.872	2340.622	2624.407	868.424	1364.857	6895.397	4525.166

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.784	—	0.745	0.405	—	0.175	-1.537	1.738	—	—	—	—	—

No JSON data available for plots.

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