Hg_chrom5_TN10mRNA_10803
Organism: Heterodera glycines Gene Locus: chr5:9972073-9978248 Feature type: polypeptideProtein Sequence
Length: 828
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 1.517 | 1.054 | 0.666 | 0.906 | 0.681 | 0.733 | 1.087 | 1.718 | 1.126 | 0.732 | 1.705 | 1.879 | 0.627 | 0.986 | 1.208 | 1.109 | 1.08 | 0.836 | 0.746 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10175
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRKR,RKRK
|
— | — |
32-65
|
0.994
|
— | — |
0.001
|
— | — |
0.143
|
0.143
|
0.031
|
0.111
|
0.393
|
0.553
|
0.464
|
0.030
|
0.570
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002253
|
3.000
|
1.000
|
Hsc_gene_13988.t1
|
— | — |
Q9VRC9.2 NPC intracellular cholesterol transporter 1 homolog 1b [Drosophila melanogaster]
|
KAF7638765.1 SSD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.859|GO:0110165_0.857|GO:0016020_0.816|GO:0071944_0.777|GO:0005886_0.754|GO:0008150_0.698|GO:0005622_0.535
|
IPR000731+492-638+|IPR003392+288-778+|IPR029213+167-300+|IPR051697+300-776+
|
— |
PF02460+288-778+Patched_family|PF14884+167-300+Type_I_membrane_glycoproteins_cell-cell_fusogen
|
— |
PTHR10796+300-776+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-182
|
2.000
|
1-104;183-828
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
93279.550
|
6.149
|
-4.000
|
23.068
|
12.560
|
47.464
|
52.536
|
11.836
|
11.232
|
50.725
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
1730.385
|
886.709
|
1008.302
|
1039.934
|
1726.931
|
1241.081
|
1746.422
|
1190.336
|
451.680
|
3916.781
|
2431.738
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.153
|
0.700
|
-0.462
|
0.503
|
— |
0.695
|
-3.225
|
— | — | — | — |
No JSON data available for plots.