Hg_chrom5_TN10mRNA_10805
Organism: Heterodera glycines Gene Locus: chr5:9984030-9984627 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.78 | 1.22 | 0.231 | 0.0 | 0.86 | 0.479 | 1.342 | 1.641 | 1.905 | 1.22 | 1.974 | 2.237 | 1.033 | 1.37 | 0.959 | 0.55 | 0.915 | 1.549 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10177
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.596
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS
|
11-31
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.651
|
0.121
|
0.027
|
0.312
|
0.093
|
0.092
|
0.074
|
0.019
|
0.176
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000317
|
2.000
|
7.000
|
Hsc_gene_16336.t1;Hsc_gene_16336.t2;Hsc_gene_16352.t1;Hsc_gene_16356.t1;Hsc_gene_19483.t1;Hsc_gene_23724.t1;Hsc_gene_23725.t1
|
— | — | — |
KAI3411070.1 hypothetical protein GPALN_003155 [Globodera pallida]
|
MDU1889133
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
17158.450
|
11.074
|
14.000
|
24.161
|
14.094
|
40.940
|
59.060
|
17.450
|
6.711
|
42.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
13.993
|
3.698
|
13.334
|
9.434
|
41.755
|
26.575
|
23.328
|
45.129
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.613
|
1.218
|
— |
2.119
|
-0.640
|
— |
0.658
|
-0.808
|
— | — | — | — | — |
No JSON data available for plots.