SCN Proteipedia

Hg_chrom5_TN10mRNA_10806

Organism: Heterodera glycines Gene Locus: chr5:9986198-9994491 Feature type: polypeptide

Protein Sequence

Length: 902

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.147	0.645	1.088	0.841	1.22	0.967	0.488	1.109	1.207	1.528	0.806	1.5	1.016	0.704	1.177	1.029	1.036	1.176	0.341	0.62	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10178	—	—	1.111	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKKAAMVDDASAAMKKQKE	—	—	—	—	—	—	0.000	—	—	0.306	0.151	0.011	0.548	0.314	0.430	0.501	0.015	0.282	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004206	3.000	0.000	0.000	Hsc_gene_1239.t1;Hsc_gene_1240.t1;Hsc_gene_16357.t1;Hsc_gene_16358.t1;Hsc_gene_19519.t1;Hsc_gene_24954.t1;Hsc_gene_24954.t2;Hsc_gene_24955.t1	—	Q9PUE4.2 Coatomer subunit gamma-2 [Danio rerio]	KAI1727601.1 coatomer gamma subunit appendage platform subdomain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030117\|GO:0030126	GO:0005575_0.895\|GO:0110165_0.884\|GO:0005622_0.797\|GO:0016020_0.761\|GO:0005737_0.742\|GO:0071944_0.732\|GO:0005886_0.712\|GO:0043226_0.696\|GO:0043229_0.669\|GO:0008150_0.661\|GO:0043227_0.660\|GO:0043231_0.633\|GO:0009987_0.604\|GO:0005773_0.526\|GO:0012505_0.515	IPR002553+22-544+\|IPR009028+795-901+\|IPR011989+17-317_333-558+\|IPR012295+782-902+\|IPR013040+630-780+\|IPR013041+621-784+\|IPR016024+24-560+\|IPR017106+1-902_3-901+\|IPR032154+793-901+\|IPR037067+618-781+	—	PF01602+22-544+Adaptin_N_terminal_region\|PF08752+630-780+Coatomer_gamma_subunit_appendage_platform_subdomain\|PF16381+793-901+Coatomer_subunit_gamma-1_C-terminal_appendage_platform	G3DSA:1.25.10.10:FF:000071+334-542+Coatomer_subunit_gamma\|G3DSA:1.25.10.10:FF:000382+18-317+Coatomer_subunit_gamma\|G3DSA:2.60.40.1480:FF:000001+620-781+Coatomer_subunit_gamma\|G3DSA:3.30.310.10:FF:000011+782-902+Coatomer_subunit_gamma	PTHR10261+3-901+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25	1.000	26-902	3tjz_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.625	100060.110	5.671	-10.000	26.608	8.426	46.674	53.326	13.304	13.304	50.111

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	red	1177.563	1193.802	678.254	1124.762	1525.334	1395.959	1859.957	704.992	524.354	1577.427	1126.110

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.044	-0.223	0.838	0.408	—	0.425	-1.091	1.542	—	—	—	—	—

No JSON data available for plots.

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