Hg_chrom5_TN10mRNA_10807
Organism: Heterodera glycines Gene Locus: chr5:9994614-9996649 Feature type: polypeptideProtein Sequence
Length: 116
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.501 | 0.802 | 0.784 | 0.0 | 0.862 | 1.989 | 0.411 | 1.293 | 1.341 | 1.514 | 1.306 | 3.043 | 1.437 | 0.497 | 2.287 | 0.616 | 0.707 | 0.784 | 1.989 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10179
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.581
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
22-42
|
0.969
|
— | — | — | — |
0.000
|
— | — |
0.056
|
0.939
|
0.361
|
0.144
|
0.014
|
0.013
|
0.024
|
0.021
|
0.080
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002252
|
3.000
|
1.000
|
Hsc_gene_1241.t1
|
Hsc_gene_1241.t1;Hsc_gene_16359.t1
|
— |
P82921.3 Small ribosomal subunit protein bS21m [Homo sapiens]
|
KJH45587.1 ribosomal protein S21 [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.930|GO:0110165_0.924|GO:0005622_0.895|GO:0043226_0.859|GO:0043229_0.852|GO:0016020_0.849|GO:0043227_0.796|GO:0005737_0.789|GO:0043231_0.777|GO:0031090_0.590|GO:0005739_0.580|GO:0031967_0.573|GO:0005740_0.563|GO:0031966_0.563|GO:0005743_0.559|GO:0019866_0.559
|
IPR001911+37-88_37-89+
|
— |
PF01165+37-88+Ribosomal_protein_S21
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-116
|
6nu3_AQ
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
14093.580
|
11.270
|
13.500
|
31.897
|
12.931
|
51.724
|
48.276
|
22.414
|
9.483
|
31.897
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
blue
|
387.518
|
61.115
|
71.703
|
149.961
|
157.726
|
114.873
|
209.797
|
182.446
|
391.734
|
1046.235
|
765.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.157
|
1.175
|
— |
-0.443
|
0.882
|
0.562
|
0.347
|
— | — | — | — | — |
No JSON data available for plots.