Hg_chrom5_TN10mRNA_10808
Organism: Heterodera glycines Gene Locus: chr5:10001290-10003302 Feature type: polypeptideProtein Sequence
Length: 185
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.503 | 1.257 | 0.393 | 0.0 | 1.712 | 0.97 | 0.45 | 0.541 | 2.282 | 0.657 | 3.358 | 1.272 | 1.652 | 0.312 | 1.544 | 0.618 | 0.62 | 0.41 | 1.247 | 0.636 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10180
|
— | — |
1.444
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,RKRK,KKQLGLIKKFSRRQKV,RKEKSYILNANRNKRAKI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.823
|
0.250
|
0.041
|
0.452
|
0.082
|
0.106
|
0.091
|
0.019
|
0.057
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000145
|
12.000
|
1.000
|
Hsc_gene_14377.t1
|
— | — | — |
KAI3412127.1 hypothetical protein GPALN_002169 [Globodera pallida]
|
GHO73873
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0004803|GO:0006313
|
— |
IPR002514+135-183+|IPR009057+134-184+
|
— |
PF01527+135-183+Transposase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-185
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
22368.450
|
11.079
|
33.000
|
43.243
|
10.811
|
60.541
|
39.459
|
30.811
|
12.432
|
28.108
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
20.895
|
0.983
|
0.818
|
12.725
|
2.764
|
0.636
|
0.605
|
0.408
|
9.268
|
77.360
|
48.178
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.549
|
4.087
|
-2.223
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.